PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10003338m
Common NameEUTSA_v10003338mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family M-type_MADS
Protein Properties Length: 212aa    MW: 24263 Da    PI: 9.8401
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10003338mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF70.71.3e-221860345
                     --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
           SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                     i+ +s rqvtfskRr+g++KKA+EL++LC+ae+a+i+fs+  k
  Thhalv10003338m 18 IKKESHRQVTFSKRRAGLFKKASELCTLCGAEIAIIVFSPAKK 60
                     8999***********************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.3E-30867IPR002100Transcription factor, MADS-box
PROSITE profilePS5006623.717868IPR002100Transcription factor, MADS-box
CDDcd002657.24E-34984No hitNo description
SuperFamilySSF554551.7E-28988IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-171030IPR002100Transcription factor, MADS-box
PfamPF003191.1E-251764IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-173045IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-174566IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009559Biological Processembryo sac central cell differentiation
GO:0043078Cellular Componentpolar nucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MSKKKESIGR QRIPMVKIKK ESHRQVTFSK RRAGLFKKAS ELCTLCGAEI AIIVFSPAKK  60
PFSFGHPSVE SVLDRYMSRN NMSLAHTQQR NPAASCELNM RLTQILSELE EEKKKGQAME  120
EMRRENARRS MNNWWEGPVE EMNMVQLQEM KHALEELRKT VVLEANTVPF NEVKEDVFGF  180
LDIKVRTAPS YMNMSSGLSN NYNFAYGNGC F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A1e-15890190MEF2 CHIMERA
6byy_B1e-15890190MEF2 CHIMERA
6byy_C1e-15890190MEF2 CHIMERA
6byy_D1e-15890190MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. {ECO:0000269|PubMed:18599653, ECO:0000269|PubMed:18713950}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10003338m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006403321.11e-157agamous-like MADS-box protein AGL61
SwissprotQ4PSU41e-121AGL61_ARATH; Agamous-like MADS-box protein AGL61
TrEMBLV4LLZ61e-156V4LLZ6_EUTSA; Uncharacterized protein
STRINGXP_006403321.11e-157(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8628390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.11e-112AGAMOUS-like 61
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]