PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10003231m | ||||||||
Common Name | EUTSA_v10003231mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | C3H | ||||||||
Protein Properties | Length: 378aa MW: 41552.4 Da PI: 8.2968 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 21.7 | 3.5e-07 | 97 | 120 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 e C+ f+ +G C++Gd C FaHg Thhalv10003231m 97 GEVCPEFRHGGDCSRGDECGFAHG 120 589********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 3.01E-5 | 93 | 124 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0042 | 94 | 121 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 11.732 | 95 | 122 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.7E-5 | 97 | 122 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.7E-5 | 98 | 120 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3 | 130 | 153 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000932 | Cellular Component | cytoplasmic mRNA processing body | ||||
GO:0010494 | Cellular Component | cytoplasmic stress granule | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 378 aa Download sequence Send to blast |
MNVEHHSSGH ISVDIPPRKL LSSSKSPSSA TSRPKDHKDY CYDSDSDDPY AGDHFRMYEF 60 KIRRCTRSRS HDWTDCPFSH PGEKARRRDP RRYHYTGEVC PEFRHGGDCS RGDECGFAHG 120 VFECWLHPSR YRTEACKDGK HCKRKICFFA HSPRQLRVLP PPEKFISGGN GGSASMLSSK 180 SNGCCMFCSH SPTSTLFGLT RSPSSSPPLS PANKSAVFSR LSRRRSSVAY KEVLNELINS 240 LDSVSLTEAL AVASSSSCPV TMPVSTAAML ASSSLSNHHH HRLPPWLDVG ERDHQYQQSS 300 SLQFALSPSS TPSYLHGQLQ LQPPPPSFFS DEITPRGGRL SDFTAAAAAA AEARDKSGFE 360 VGSCGDLDLG WVNDLLK* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10003231m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB011475 | 1e-134 | AB011475.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K9L2. | |||
GenBank | AY034916 | 1e-134 | AY034916.1 Arabidopsis thaliana unknown protein (At5g44260) mRNA, complete cds. | |||
GenBank | AY142542 | 1e-134 | AY142542.1 Arabidopsis thaliana unknown protein (At5g44260) mRNA, complete cds. | |||
GenBank | CP002688 | 1e-134 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006403122.1 | 0.0 | zinc finger CCCH domain-containing protein 61 | ||||
Swissprot | Q9FKW2 | 1e-180 | C3H61_ARATH; Zinc finger CCCH domain-containing protein 61 | ||||
TrEMBL | V4L2P4 | 0.0 | V4L2P4_EUTSA; Uncharacterized protein | ||||
STRING | XP_006403122.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2987 | 27 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44260.1 | 1e-132 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10003231m |
Entrez Gene | 18020665 |