PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10003223m | ||||||||
Common Name | EUTSA_v10003223mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | G2-like | ||||||||
Protein Properties | Length: 393aa MW: 42992.3 Da PI: 6.9757 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 90.7 | 1.3e-28 | 144 | 198 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k++++Wtp+LH++Fv+aveqL G +kA+P++ile+m+vk+Lt+++v+SHLQkYR++ Thhalv10003223m 144 KTKVDWTPDLHRKFVQAVEQL-GVDKAVPSRILEIMNVKSLTRHNVASHLQKYRSH 198 6799*****************.********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.785 | 141 | 200 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.3E-28 | 142 | 201 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.6E-19 | 142 | 201 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.8E-26 | 144 | 198 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 8.5E-8 | 147 | 196 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009658 | Biological Process | chloroplast organization | ||||
GO:0009910 | Biological Process | negative regulation of flower development | ||||
GO:0010380 | Biological Process | regulation of chlorophyll biosynthetic process | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:1900056 | Biological Process | negative regulation of leaf senescence | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 393 aa Download sequence Send to blast |
MLTVSPLVVN NTTSKDDHMA ADFADFTTED LPDFKTVGDF SDDGSLDFLE GIDYYDDLFI 60 GFDGDDVLPD LEILGEHSGG SGRDEEQEME GNTSTASETS ERDGGEFKPQ GGAGGDTDKT 120 VRRGKRKGKK NKDCLSANNE IKKKTKVDWT PDLHRKFVQA VEQLGVDKAV PSRILEIMNV 180 KSLTRHNVAS HLQKYRSHRK HLLAREAEAA SWNLRRHATV AVAGGGGGKK PWMAPALGYP 240 PHVTPLHHGH FRPLHVWGHP TWPKHKPNIP PTTHRTFPIP AVAAVAPSSW PAHPPYWHQQ 300 PLYPQGYGMA SSSNHSMYNI KSETSIGVPT RPLGPTNPPL DIHPSNESID AAIGDVITKP 360 WLPLPLGLKP PSVDGVMTEL QRQGVPNVPP RP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 1e-16 | 142 | 196 | 3 | 57 | ARR10-B |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 121 | 129 | RRGKRKGKK |
2 | 124 | 132 | KRKGKKNKD |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that functions with GLK1 to promote chloroplast development. Acts as an activator of nuclear photosynthetic genes involved in chlorophyll biosynthesis, light harvesting, and electron transport. Acts in a cell-autonomous manner to coordinate and maintain the photosynthetic apparatus within individual cells. May function in photosynthetic capacity optimization by integrating responses to variable environmental and endogenous cues (PubMed:11828027, PubMed:12220263, PubMed:18643989, PubMed:19376934, PubMed:19383092, PubMed:19726569). Prevents premature senescence (PubMed:23459204). {ECO:0000269|PubMed:11828027, ECO:0000269|PubMed:12220263, ECO:0000269|PubMed:18643989, ECO:0000269|PubMed:19376934, ECO:0000269|PubMed:19383092, ECO:0000269|PubMed:19726569, ECO:0000269|PubMed:23459204}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10003223m |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light. Repressed by BZR2. {ECO:0000269|PubMed:12220263, ECO:0000269|PubMed:21214652}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK352633 | 0.0 | AK352633.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-04-O13. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006403130.1 | 0.0 | transcription activator GLK2 | ||||
Swissprot | Q9FFH0 | 0.0 | GLK2_ARATH; Transcription activator GLK2 | ||||
TrEMBL | E4MVT6 | 0.0 | E4MVT6_EUTHA; mRNA, clone: RTFL01-04-O13 | ||||
TrEMBL | V4LXG8 | 0.0 | V4LXG8_EUTSA; Uncharacterized protein | ||||
STRING | XP_006403130.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2209 | 27 | 73 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44190.1 | 1e-179 | GOLDEN2-like 2 |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10003223m |
Entrez Gene | 18020677 |