PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10002996m
Common NameEUTSA_v10002996mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family M-type_MADS
Protein Properties Length: 341aa    MW: 39005.6 Da    PI: 8.2113
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10002996mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF595.8e-191052244
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                     +ien+s r+ tf kR++ +lKKA+ELS+LC++ ++ ii+s+++
  Thhalv10002996m 10 FIENNSSRKATFQKRKKSLLKKAKELSTLCGVTACAIIYSPNN 52
                     8***************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006618.166152IPR002100Transcription factor, MADS-box
SMARTSM004323.9E-24160IPR002100Transcription factor, MADS-box
CDDcd002661.06E-32285No hitNo description
SuperFamilySSF554551.7E-25295IPR002100Transcription factor, MADS-box
PRINTSPR004045.2E-9323IPR002100Transcription factor, MADS-box
PfamPF003192.2E-181052IPR002100Transcription factor, MADS-box
PRINTSPR004045.2E-92338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MTRKKVKLAF IENNSSRKAT FQKRKKSLLK KAKELSTLCG VTACAIIYSP NNSNPDVWPS  60
TSGVRRIVSD FQTLPEMDQQ KKMVDQETFL RQRIAKLSEN LRKLGKDNRE QEMIEVMFQC  120
WDSSLERFHL NILDLNDLGY VIDQYQRYIN HKIEILESSS MEMGESSNNA VTAAAAHFSE  180
GIGSLAVALA TTAPAATIHE VYSSSSSAAA AVYFNSIQQQ QHHHQHQQFR HPATPHVGFY  240
EQTRNMNLSQ IHNQIPQQRF MEMMNNHPEQ MNYASQHMDN HHNPNHHNPF HHHQHHHHYH  300
YPQQQQQQIP GDSSTALTTA SSSSIIPVTS PNFTNNTWFP *
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10002996m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006418995.10.0agamous-like MADS-box protein AGL80
SwissprotQ9FJK31e-107AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLV4L1950.0V4L195_EUTSA; Uncharacterized protein
STRINGXP_006418998.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.14e-79AGAMOUS-like 80
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]