PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10002808m
Common NameEUTSA_v10002808mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family M-type_MADS
Protein Properties Length: 277aa    MW: 31571.2 Da    PI: 9.2572
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10002808mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF46.54.7e-154285850
                     HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE.EEEE CS
           SRF-TF  8 nrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl.yeys 50
                     ++++  s+R +++l KA+ELS+LC++e +vi++  +g+l ++++
  Thhalv10002808m 42 KKKTDISRREQTLLNKAYELSTLCEIELCVIYYNRDGELiKTWP 85
                     5678889******************************9856786 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.8E-62086IPR002100Transcription factor, MADS-box
PROSITE profilePS5006610.3162787IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.4E-1341122IPR002100Transcription factor, MADS-box
CDDcd002661.78E-1542112No hitNo description
PfamPF003192.4E-104380IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MDSSSSSSSS TKKMKSKLSV RRKQTSFKKS SSSVNKNIPS AKKKTDISRR EQTLLNKAYE  60
LSTLCEIELC VIYYNRDGEL IKTWPEDQSK VRDMAERFSK LSDKEKNKKS TNLSQFLNKK  120
IHDEKKREGE DNKFSQKVLE IEDSLENHLQ ILQERLRQVL YLHDHQTESD RSRLAVLSGS  180
SMAEEQKNQN FMGSSSSSGF FSTDTLMNLS NDQTSSSFAT DSLSHHQSKV SIFLYNHENA  240
TLTQLADSVP SYDQALTPYN QRRAWPEAQA CVWANL*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10002808m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006419039.10.0agamous-like MADS-box protein AGL53
SwissprotQ7X9N22e-60AGL53_ARATH; Agamous-like MADS-box protein AGL53
TrEMBLV4KI240.0V4KI24_EUTSA; Uncharacterized protein
STRINGXP_006419039.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM5753944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G27070.12e-59AGAMOUS-like 53
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]