PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10002352m
Common NameEUTSA_v10002352mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family M-type_MADS
Protein Properties Length: 325aa    MW: 36778.2 Da    PI: 7.8666
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10002352mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF54.81.2e-171050242
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                     +ien+s r+ tf kR++gilKK +E+S+LC++ ++ ii+s+
  Thhalv10002352m 10 FIENNSSRKATFQKRKKGILKKVKEISTLCGVTACAIIYSP 50
                     8**************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.1E-22160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.801149IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.27E-19159IPR002100Transcription factor, MADS-box
CDDcd002668.52E-26260No hitNo description
PRINTSPR004046.9E-9323IPR002100Transcription factor, MADS-box
PfamPF003191.4E-161051IPR002100Transcription factor, MADS-box
PRINTSPR004046.9E-92338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MTRKKVKLAF IENNSSRKAT FQKRKKGILK KVKEISTLCG VTACAIIYSP YTSNQDVWPS  60
ISDVAGDGPT KKMVDQETFL RQRIAKLSEN LRRLEKDNRE QEMIEVMFQC WDGSLERFHL  120
NILDLNTLGY VIGQYQKDIN RKIEILESSS MEMGESSNTA VTAAMAHSFE GIGSLAVASA  180
TTAPAAPAAT IHEVYSSSTS AAAATFFNSI QQQQHHHQHQ QFRHPATPHV GFYEQTRNMN  240
LNQIHSRIQQ QPFMEMMNHP DQMSDAYEYM DNRHNPNLHN PFHHHQHQQQ QQIPSDSSTA  300
LTTVSSSSII HVTSPNPTNN TWFH*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10002352m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006419174.10.0agamous-like MADS-box protein AGL80
SwissprotQ9FJK36e-91AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLV4L1X30.0V4L1X3_EUTSA; Uncharacterized protein
STRINGXP_006419176.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.18e-68AGAMOUS-like 80
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]