PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10002350m
Common NameEUTSA_v10002350mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family M-type_MADS
Protein Properties Length: 328aa    MW: 37527.1 Da    PI: 8.6087
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10002350mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF54.61.4e-171050242
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                     +ien+s r+ tf kR++gilKK +E+S+LC++ ++ ii+s+
  Thhalv10002350m 10 FIENNSSRKATFQKRKKGILKKVKEISTLCGVTACAIIYSP 50
                     8**************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006617.801149IPR002100Transcription factor, MADS-box
SMARTSM004326.3E-20160IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.62E-19164IPR002100Transcription factor, MADS-box
CDDcd002661.91E-24274No hitNo description
PRINTSPR004047.0E-9323IPR002100Transcription factor, MADS-box
PfamPF003191.3E-161051IPR002100Transcription factor, MADS-box
PRINTSPR004047.0E-92338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MTRKKVKLAF IENNSSRKAT FQKRKKGILK KVKEISTLCG VTACAIIYSP YTSNPDFRIS  60
RRCPEMDQQK KMVDQETFLR QRIAKLSENL RRLEKDNREQ EMIEVMFQCW DGSLERFHLN  120
ILDLNDLGYV IGQYQKDINR KIEILESSSM EMGESSNTAV TAAMAHSFEG IGSLAVASAT  180
TAPAAPAATI HEVYSSSTSA AAATFFNSIQ QQQHHHQHQQ FRHPATPHVG FYEQTRNMNL  240
NQIHSRIQSR IQQQPFMEMM NYPDQMSDAY EYMDNRHNPN LHNSFHHHQH QQQQQIPSDS  300
STALTTVSSS SIIHVTSPNP TNNTWFH*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10002350m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006391455.10.0agamous-like MADS-box protein AGL80
SwissprotQ9FJK31e-93AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLV4LCZ40.0V4LCZ4_EUTSA; Uncharacterized protein
STRINGXP_006419175.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.17e-70AGAMOUS-like 80
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]