PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10002204m
Common NameEUTSA_v10002204mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family M-type_MADS
Protein Properties Length: 94aa    MW: 10867.8 Da    PI: 10.6865
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10002204mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF57.91.3e-181559145
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                     krie +  r+  +skR++g++KKAeE+ vLCd+++ +++fs+t k
  Thhalv10002204m 15 KRIECQKERSSKYSKRKKGLFKKAEEMAVLCDVDIGLLVFSPTSK 59
                     79****************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006622.778767IPR002100Transcription factor, MADS-box
SMARTSM004321.2E-25766IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.07E-24886IPR002100Transcription factor, MADS-box
CDDcd001208.23E-21865No hitNo description
PRINTSPR004041.4E-16929IPR002100Transcription factor, MADS-box
PfamPF003194.6E-191662IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-162944IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-164465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 94 aa     Download sequence    Send to blast
EQLKKNMGRK KIELKRIECQ KERSSKYSKR KKGLFKKAEE MAVLCDVDIG LLVFSPTSKP  60
TLFHSRSRPL SSILDKLSAM SERDREERFL HTV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10002204m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_180200.13e-32AGAMOUS-like 33
RefseqXP_010429654.22e-31PREDICTED: agamous-like MADS-box protein AGL65
TrEMBLV4M2319e-60V4M231_EUTSA; Uncharacterized protein (Fragment)
STRINGXP_006408741.12e-60(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM73301838
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26320.12e-26AGAMOUS-like 33