PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10002027m | ||||||||
Common Name | EUTSA_v10002027mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | NAC | ||||||||
Protein Properties | Length: 357aa MW: 40573.6 Da PI: 5.5216 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 153.7 | 8.2e-48 | 14 | 140 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 l pGf+F+Ptd el+++yL++k++g++ ++ vi+e++iyk+ePwdLp ++ ++e+ew++F+ r +ky++g++++rat+ gyWkatgk+++v+ Thhalv10002027m 14 LFPGFKFSPTDVELISYYLRRKIDGDEDSV-AVIAEAEIYKFEPWDLPeESKLKSENEWFYFCARGRKYPHGSQSRRATQLGYWKATGKERSVK 106 579************************998.89***************433334678************************************* PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 s +++ vg+k+tLvf+ grap+ge+t+W+mhey + Thhalv10002027m 107 S-GNQIVGTKRTLVFHIGRAPRGERTEWIMHEYCI 140 *.999****************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.26E-53 | 6 | 155 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 51.843 | 14 | 156 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.1E-24 | 16 | 139 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009845 | Biological Process | seed germination | ||||
GO:0009938 | Biological Process | negative regulation of gibberellic acid mediated signaling pathway | ||||
GO:0033619 | Biological Process | membrane protein proteolysis | ||||
GO:0048573 | Biological Process | photoperiodism, flowering | ||||
GO:0071472 | Biological Process | cellular response to salt stress | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 357 aa Download sequence Send to blast |
MSKEAEMSIA VSALFPGFKF SPTDVELISY YLRRKIDGDE DSVAVIAEAE IYKFEPWDLP 60 EESKLKSENE WFYFCARGRK YPHGSQSRRA TQLGYWKATG KERSVKSGNQ IVGTKRTLVF 120 HIGRAPRGER TEWIMHEYCI HNAPQDALVV CRLRKNTDFR ACSNQRPMDN GHVQTDEYVD 180 QTSGLETEEK SFSVYEPELQ ISNGDIAESS NAVEDRANTD DDCYAEILND DIIKLDEEAD 240 CSIRKESKQT MNCNYALFRM KNVATGTAST DWRIPNPFHM KKDDSQRLIK NILATTAFLT 300 ILISVFFTML TTRDYTSYKA MYSASVVDKA TTGCKSDFQL STFPPAVKTY PVNNLL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 3e-41 | 4 | 153 | 10 | 165 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP), probably via metalloprotease activity. Regulates gibberellic acid-mediated salt-responsive repression of seed germination and flowering via FT, thus delaying seed germination under high salinity conditions. {ECO:0000269|PubMed:17410378, ECO:0000269|PubMed:18363782, ECO:0000269|PubMed:19704528, ECO:0000269|PubMed:19704545}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00280 | DAP | Transfer from AT2G27300 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10002027m |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By high salt stress (PubMed:19704545, PubMed:17410378, PubMed:18363782, PubMed:19704528). Repressed by gibberellic acid (GA), but induced by the GA biosynthetic inhibitor paclabutrazol (PAC) (PubMed:18363782). Accumulates transiently in seeds upon imbibition (PubMed:19704545, PubMed:17410378, PubMed:18363782, PubMed:19704528). Induced by drought stress (PubMed:17158162). {ECO:0000269|PubMed:17158162, ECO:0000269|PubMed:17410378, ECO:0000269|PubMed:18363782, ECO:0000269|PubMed:19704528, ECO:0000269|PubMed:19704545}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024016083.1 | 0.0 | NAC domain-containing protein 40 | ||||
Swissprot | Q9XIN7 | 0.0 | NAC40_ARATH; NAC domain-containing protein 40 | ||||
TrEMBL | V4NTW0 | 0.0 | V4NTW0_EUTSA; Uncharacterized protein | ||||
STRING | XP_006408703.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10453 | 25 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G27300.1 | 0.0 | NTM1-like 8 |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10002027m |
Entrez Gene | 18025442 |
Publications ? help Back to Top | |||
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