PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10001561m
Common NameEUTSA_v10001561mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family ERF
Protein Properties Length: 306aa    MW: 33913.9 Da    PI: 4.6718
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10001561mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.63.1e-18103153256
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                      +y+GVr+++ +g+++AeIrdp++   r+r++lg+f taeeAa  +++a+ +l+g+
  Thhalv10001561m 103 KYRGVRQRP-WGKYAAEIRDPKT---RTRIWLGTFATAEEAAMGYDRAAIQLKGH 153
                      8********.**********965...4************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.29E-20103160IPR016177DNA-binding domain
CDDcd000181.85E-31103159No hitNo description
PfamPF008475.5E-12103153IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-29103159IPR001471AP2/ERF domain
SMARTSM003808.8E-36103166IPR001471AP2/ERF domain
PROSITE profilePS5103221.759103160IPR001471AP2/ERF domain
PRINTSPR003672.2E-10104115IPR001471AP2/ERF domain
PRINTSPR003672.2E-10126142IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MKSRETKVKY TVHRKITSIT EKPLTGFPKV VKITVTDPCA TDSSSDEEND KTMAPATTTR  60
VKRYVEEIRF CDEDGAAKRE KPARKATNKA AENGGDGSVK PVKYRGVRQR PWGKYAAEIR  120
DPKTRTRIWL GTFATAEEAA MGYDRAAIQL KGHNAQTNFL TPPSNLPETP VIDLETVSGC  180
DSARESLTNL CSPTSVLRFN SNEETEYIIE PVKLESKAVD EETPASSSLS DPFFLPDLFR  240
AGDCFWDSEI APDPLFLDEI QSLQTNNTIT SKDPTLSESF PLSVIGDLSS CSWDVDEFFQ  300
DHLLD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-21104159359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A4e-21104159662ATERF1
3gcc_A4e-21104159662ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10001561m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cytokinins. {ECO:0000269|PubMed:16832061}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006397817.10.0ethylene-responsive transcription factor CRF5
SwissprotO823391e-136CRF5_ARATH; Ethylene-responsive transcription factor CRF5
TrEMBLV4KMY70.0V4KMY7_EUTSA; Uncharacterized protein
STRINGXP_006397817.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25782571
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46310.11e-139cytokinin response factor 5
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Striberny B, et al.
    Cytokinin Response Factor 5 has transcriptional activity governed by its C-terminal domain.
    Plant Signal Behav, 2017. 12(2): p. e1276684
    [PMID:28045578]