PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10001174m
Common NameEUTSA_v10001174mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family WOX
Protein Properties Length: 277aa    MW: 31815.2 Da    PI: 6.734
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10001174mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox67.51.7e-2160118356
                      --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHH CS
         Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakek 56 
                      +R+++t+eq+++Lee++++ +r+p++e+++++A+kl    +++ ++V++WFqN++a+e+
  Thhalv10001174m  60 SRWNPTPEQITTLEEVYRSgTRTPTTEQIQKIASKLrkygRIEGKNVFYWFQNHKARER 118
                      7*****************99*************************************98 PP
2Wus_type_Homeobox113.31.3e-3658120264
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 
                        a++RW+PtpeQi+ Lee+y+sG+rtP++e+iq+i+++L++yG+ie+kNVfyWFQN+kaRer k
    Thhalv10001174m  58 ATSRWNPTPEQITTLEEVYRSGTRTPTTEQIQKIASKLRKYGRIEGKNVFYWFQNHKARERLK 120
                        689**********************************************************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007111.35355120IPR001356Homeobox domain
SMARTSM003892.6E-657124IPR001356Homeobox domain
SuperFamilySSF466897.7E-1257118IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-860118IPR009057Homeodomain-like
PfamPF000464.0E-1960118IPR001356Homeobox domain
CDDcd000864.36E-661118No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0016049Biological Processcell growth
GO:0048314Biological Processembryo sac morphogenesis
GO:0048446Biological Processpetal morphogenesis
GO:0048482Biological Processplant ovule morphogenesis
GO:0051301Biological Processcell division
GO:0048353Cellular Componentprimary endosperm nucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MGYISNKNLI NFLPLPTTQP HLLLTQCDIT GNDHHQIITG SSSGEIGDDR KNNLPTAATS  60
RWNPTPEQIT TLEEVYRSGT RTPTTEQIQK IASKLRKYGR IEGKNVFYWF QNHKARERLK  120
RRRCEGDDDI NNVREPHHHV KDSSSGGSRV DHTKSCPSFP HTNPQPQDEL APANCNKANN  180
EEHGTTRDSE RASEDGKDTM WRNLVTSSVT QKPREINIDE NVNGEVEEET REITTLNLFP  240
VMENQEITDR FTEKKERKAN QVYCNFCCYY EFMPHR*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that plays a central role in ovule patterning by regulating cell proliferation of the maternal integuments and differentiation of the maegaspore mother cell (MCC). Involved in AGAMOUS (AG) repression in leaves. {ECO:0000269|PubMed:15659481}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10001174m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006398542.10.0WUSCHEL-related homeobox 6
SwissprotQ9ZVF51e-127WOX6_ARATH; WUSCHEL-related homeobox 6
TrEMBLV4KQ450.0V4KQ45_EUTSA; Uncharacterized protein
STRINGXP_006398542.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM133691828
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01500.11e-119WOX family protein