PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10001168m
Common NameEUTSA_v10001168mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family M-type_MADS
Protein Properties Length: 157aa    MW: 18179.5 Da    PI: 11.0463
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10001168mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF23.47.6e-081157349
                     --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
           SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                     ie +  r    sk r+gi+ KA+ L  L ++evav i s+ g+ y +
  Thhalv10001168m 11 IEKSLTRRMIISKCRAGIFNKANALARLHNVEVAVFINSPAGRQYLF 57
                     88899999999*******************************98766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006616.161161IPR002100Transcription factor, MADS-box
SMARTSM004324.7E-8160IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.98E-13166IPR002100Transcription factor, MADS-box
PRINTSPR004044.5E-6323IPR002100Transcription factor, MADS-box
PfamPF003193.6E-81157IPR002100Transcription factor, MADS-box
PRINTSPR004044.5E-62338IPR002100Transcription factor, MADS-box
PRINTSPR004044.5E-63859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MGFRKIKINY IEKSLTRRMI ISKCRAGIFN KANALARLHN VEVAVFINSP AGRQYLFRSP  60
GFNSYSRKSG RSSASLKKAR ILKLQAKLVG VMKKLEAEKQ REKVLKKRFE ETLQKYNMKE  120
IENSSLEELI AFKEKLETLR KTVNQKRMEM EVSLSY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10001168m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006398327.11e-108agamous-like MADS-box protein AGL29
TrEMBLV4KPE91e-106V4KPE9_EUTSA; Uncharacterized protein
STRINGXP_006398327.11e-107(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1548036
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G47760.11e-25AGAMOUS-like 102