PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10000871m
Common NameEUTSA_v10000871mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family GATA
Protein Properties Length: 478aa    MW: 53672.5 Da    PI: 6.051
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10000871mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA50.13.7e-16741135
             GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                     C +Cg+t+TplWR+gp  ++ LCnaCG ++r kg+
  Thhalv10000871m  7 CYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGT 41
                     ****************88888***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.0E-10155IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.05E-11546No hitNo description
CDDcd002021.87E-17663No hitNo description
Gene3DG3DSA:3.30.50.101.2E-12741IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011411.2740IPR000679Zinc finger, GATA-type
PROSITE patternPS003440732IPR000679Zinc finger, GATA-type
PfamPF003206.0E-14741IPR000679Zinc finger, GATA-type
PfamPF139194.4E-8247329IPR028020ASX homology domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 478 aa     Download sequence    Send to blast
MGKQGPCYHC GVTSTPLWRN GPPEKPVLCN ACGSRWRTKG TLVNYTPLHA RAEGDEIEIE  60
DHRAQRIMIK GMSVNKKIPK RKLYQENFTI KRANLEFNNG FKMKALEEEA SNRSSSGSVV  120
SNSESCDQSN AWETTFPCKR RTCVGRPKAA SSVEKLTKDL YSILQEQQSS CLSGSSEEDL  180
LFENESPMVI GHGSVLMRDP HSREEESEAS SLLAESSKSS SMHSVKFGGK AIKQELFKRT  240
KSQALGRHSL SLCNIDLKDV FNFDEFMEKF TEEEQQKLMK LLPQVDSVDL PDSLRSMFES  300
SQFQENFSLF QRLVADGVFE TSSSSSSSSR SKLEDIKTLA KLALSDPNKS HLLESYDLLK  360
EQRKGIEDSV TATSRVSNPN LSNNHSLVTI ERPCESLNQN FSEKRVVMRS PKDVMKIRSN  420
LMETEEFLEN SVSSFNPMSK ACSMMFSYEE NDISDQDLLL DVPPNGSFPQ AELLHMI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17582KKIPKRKL
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10000871m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006398409.10.0GATA transcription factor 27 isoform X1
SwissprotQ5PP380.0GAT27_ARATH; GATA transcription factor 27
TrEMBLV4LBU20.0V4LBU2_EUTSA; Uncharacterized protein
STRINGXP_006398409.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16062785
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47140.10.0GATA transcription factor 27