PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10000686m
Common NameEUTSA_v10000686mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family WRKY
Protein Properties Length: 315aa    MW: 35627.9 Da    PI: 5.354
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10000686mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY71.71e-22103164159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                      l+Dg++WrKYGqK++k s + r YYrC++a   +C+++k+v++ ++ p+v+ +tY g+H +e
  Thhalv10000686m 103 LNDGFSWRKYGQKKIKTSSHQRCYYRCAYAkdrNCNATKRVQQIQDTPSVFRTTYVGKHICE 164
                      58***************************99999*************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081119.95698166IPR003657WRKY domain
SuperFamilySSF1182908.24E-23100165IPR003657WRKY domain
Gene3DG3DSA:2.20.25.808.9E-24100164IPR003657WRKY domain
SMARTSM007743.7E-33103165IPR003657WRKY domain
PfamPF031066.5E-23104163IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016021Cellular Componentintegral component of membrane
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MFHGVDKAVE ALLRGQESAT RLKTVLEHSR TGSVPTEPLF DTVLDSFSFA LSLFTNVTSS  60
NPQPHRESSQ NKAAPVARKS PKKTSNGENG LEHYIDDSPT PLLNDGFSWR KYGQKKIKTS  120
SHQRCYYRCA YAKDRNCNAT KRVQQIQDTP SVFRTTYVGK HICEVDAFSQ HNDDITNGSK  180
MIRFDKIDQP MSELVMPQLV PVDNQVITIE DDEGTDQIMN LECDSNEFLV DDDQLWAYQF  240
PPSSPGNFMF LDDISAAFDY NPFHFEQALF QASYVHTVKR QLLPLPFIGF YLQTTSIWLF  300
AISCISLYFG GLDS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-15103164869OsWRKY45
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10000686m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006405092.10.0probable WRKY transcription factor 64
SwissprotQ9C5574e-88WRK64_ARATH; Probable WRKY transcription factor 64
TrEMBLV4L8490.0V4L849_EUTSA; Uncharacterized protein
STRINGXP_006405092.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56091847
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66560.12e-90WRKY DNA-binding protein 64