PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10000515m
Common NameEUTSA_v10000515mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family B3
Protein Properties Length: 393aa    MW: 45107.8 Da    PI: 10.0304
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10000515mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.43.5e-1513931096
                     HHHTT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
               B3 10 vlksgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96
                      + s+ l++p  f++++ +gk+e ++t +l++  s  +W+vk+  + ++ r  lt+GWkeF+ a++ + gD+v+F+ +++++f  +v+ 
  Thhalv10000515m 13 DFHSH-LTIPVAFFSKYiKGKNEHKTTAKLRSdASEITWRVKV--EDGR-R--LTDGWKEFALAHDFRIGDIVIFRQEKDMTF--HVTP 93
                     45555.9***********77777888****997888*******..4444.3..9**********************5555555..7765 PP
2B370.62e-22140227494
                      E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EE CS
               B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvv 94 
                      + +++ +l+ + l+lp +fa+++g++++++ +++l++ +grsW++ l  +kk g++++++GW+ F++ang k+gDf+++kl++r ++  lv+
  Thhalv10000515m 140 ANVTHASLRYDSLSLPMSFARANGLNTRCG-EIVLMNDKGRSWTLAL-KQKKCGTTYIRRGWRTFCSANGYKAGDFFTLKLIQRgKN--LVL 227
                      567788899999**************9987.****************.466666799*************************96343..344 PP
3B359.75.1e-19290386199
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                      f++ ++++ v k+++l lp +f++ +g+   e++++tl d++  +W   l+   +++r+ l kGW+eF kan++k g++v++kl+++ ++++v+
  Thhalv10000515m 290 FVTLTLRPWVVKNSILFLPMPFTRMNGIT--EKTKMTLLDKNDVKWPTGLRSGDQGKRIRLVKGWREFFKANNVKIGESVMLKLIWEGDANCVL 381
                      6677788999*************999877..5569***************88888888************************************ PP

                      EEE-S CS
               B3  95 kvfrk 99 
                      k+++k
  Thhalv10000515m 382 KFCSK 386
                      **987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.364397IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.1E-223110IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.18E-184104IPR015300DNA-binding pseudobarrel domain
CDDcd100175.66E-15494No hitNo description
SMARTSM010199.5E-21697IPR003340B3 DNA binding domain
PfamPF023621.1E-101590IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.5E-21129229IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-19136235IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086315.171137235IPR003340B3 DNA binding domain
CDDcd100171.58E-17137228No hitNo description
SMARTSM010193.4E-24138233IPR003340B3 DNA binding domain
PfamPF023628.2E-22139228IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.4E-18283386IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-19286385IPR015300DNA-binding pseudobarrel domain
CDDcd100178.24E-15289384No hitNo description
SMARTSM010196.3E-24290387IPR003340B3 DNA binding domain
PfamPF023625.5E-18290386IPR003340B3 DNA binding domain
PROSITE profilePS5086313.14290387IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MAKRHFFQPL LPDFHSHLTI PVAFFSKYIK GKNEHKTTAK LRSDASEITW RVKVEDGRRL  60
TDGWKEFALA HDFRIGDIVI FRQEKDMTFH VTPFGPSCCE IQYESCLDDE NKLEKIPKKK  120
KRVKREAESS SSLNPSCFVA NVTHASLRYD SLSLPMSFAR ANGLNTRCGE IVLMNDKGRS  180
WTLALKQKKC GTTYIRRGWR TFCSANGYKA GDFFTLKLIQ RGKNLVLRLS LNESEEEEED  240
DCSLEANDIE PQSDEESNQD ERSSQKCSER KHRTGKSTWK ASPSPSQNRF VTLTLRPWVV  300
KNSILFLPMP FTRMNGITEK TKMTLLDKND VKWPTGLRSG DQGKRIRLVK GWREFFKANN  360
VKIGESVMLK LIWEGDANCV LKFCSKVKQV TK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1117124KKKKRVKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10000515m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006405004.10.0B3 domain-containing protein REM14
RefseqXP_024014117.10.0B3 domain-containing protein REM14
SwissprotO230761e-108REM15_ARATH; Putative B3 domain-containing protein REM15
TrEMBLV4LVC90.0V4LVC9_EUTSA; Uncharacterized protein
STRINGXP_006405004.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00260.11e-101B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]