PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Thhalv10000479m | ||||||||
Common Name | EUTSA_v10000479mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 204aa MW: 23247.9 Da PI: 9.8989 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 70.8 | 1.2e-22 | 19 | 61 | 3 | 45 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 i+ +s rqvtfskRr+g++KKA+EL++LC+ae+a+i+fs+ k Thhalv10000479m 19 IKKESHRQVTFSKRRAGLFKKASELCTLCGAEIAIIVFSPAKK 61 8999***********************************9876 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 23.717 | 9 | 69 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 3.3E-30 | 9 | 68 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.62E-28 | 10 | 89 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 5.32E-34 | 10 | 78 | No hit | No description |
PRINTS | PR00404 | 2.7E-17 | 11 | 31 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 9.8E-26 | 18 | 65 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.7E-17 | 31 | 46 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.7E-17 | 46 | 67 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 204 aa Download sequence Send to blast |
MTSKKKESIG RQRIPMVKIK KESHRQVTFS KRRAGLFKKA SELCTLCGAE IAIIVFSPAK 60 KPFSFGHPSV ESVLDRYMSR NNMSMAQTRN PAASCELNMR LTQILSEVEE EKKKGQAMEE 120 MRRENARRAM INWWEGPVEE MNMVQLQEMK FALEELRKTV LLETNKEDVF GFLDNKVTTV 180 PSYMNMSSGL PNTSNFAYGN GCF* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 1e-15 | 9 | 81 | 1 | 73 | MEF2C |
5f28_B | 1e-15 | 9 | 81 | 1 | 73 | MEF2C |
5f28_C | 1e-15 | 9 | 81 | 1 | 73 | MEF2C |
5f28_D | 1e-15 | 9 | 81 | 1 | 73 | MEF2C |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. Controls central cell differentiation during female gametophyte development. {ECO:0000269|PubMed:18599653, ECO:0000269|PubMed:18713950}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Thhalv10000479m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006405049.1 | 1e-150 | agamous-like MADS-box protein AGL61 | ||||
Swissprot | Q4PSU4 | 1e-118 | AGL61_ARATH; Agamous-like MADS-box protein AGL61 | ||||
TrEMBL | V4LVK6 | 1e-149 | V4LVK6_EUTSA; Uncharacterized protein | ||||
STRING | XP_006405049.1 | 1e-150 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM86 | 28 | 390 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G24840.1 | 1e-109 | AGAMOUS-like 61 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Thhalv10000479m |
Entrez Gene | 18022137 |
Publications ? help Back to Top | |||
---|---|---|---|
|