PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10000331m
Common NameEUTSA_v10000331mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family WRKY
Protein Properties Length: 198aa    MW: 22674.2 Da    PI: 6.5834
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10000331mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY89.72.4e-28105163159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDgy+WrKYG+K+++gs++pr+Y++C+ +gC vkkk++ ++++p++v +tYeg+Hnh+
  Thhalv10000331m 105 LDDGYKWRKYGKKTIRGSPHPRHYHKCSNPGCIVKKKIDIDTSNPEYVLTTYEGRHNHP 163
                      59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.0E-2795165IPR003657WRKY domain
PROSITE profilePS5081128.839100165IPR003657WRKY domain
SuperFamilySSF1182909.94E-25100165IPR003657WRKY domain
SMARTSM007742.3E-28105164IPR003657WRKY domain
PfamPF031066.6E-21106163IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MNYPSNPNPN FTDFAETFEF DDFDDTTFQM IMEEFSLEDH SPTLSWTSSE KLLAAEVTSP  60
LQTSLATSPM SLEIGKKDEI KKRKRHKDDH QVIHVFKTKS AKETLDDGYK WRKYGKKTIR  120
GSPHPRHYHK CSNPGCIVKK KIDIDTSNPE YVLTTYEGRH NHPSPSVVYC DSDDFDLTSL  180
NTLSFQTHTY SYSHSAP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-2396166878Probable WRKY transcription factor 4
2lex_A4e-2396166878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00270DAPTransfer from AT2G21900Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10000331m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM5931600.0KM593160.1 Brassica oleracea var. capitata WRKY transcription factor (WRKY92) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006404643.11e-146probable WRKY transcription factor 59
SwissprotQ9SJ092e-86WRK59_ARATH; Probable WRKY transcription factor 59
TrEMBLV4NIM61e-145V4NIM6_EUTSA; Uncharacterized protein
STRINGXP_006404643.11e-146(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM138351726
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G21900.12e-74WRKY DNA-binding protein 59