PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10000270m | ||||||||
Common Name | EUTSA_v10000270mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | WRKY | ||||||||
Protein Properties | Length: 298aa MW: 32148.4 Da PI: 10.2077 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 100.1 | 1.3e-31 | 221 | 278 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+a+d +++++tYeg+Hnh+ Thhalv10000270m 221 DDYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERAADDSSMLIVTYEGDHNHS 278 99************************988****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10533 | 7.8E-16 | 170 | 217 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 3.4E-33 | 208 | 278 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.607 | 214 | 280 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 7.85E-27 | 217 | 279 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.7E-37 | 219 | 279 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.5E-27 | 221 | 277 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005516 | Molecular Function | calmodulin binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 298 aa Download sequence Send to blast |
MAVELMTRNY ISGVGADSFA VQEAAASGLK SMENFIGLMS RESCNNSDQP SSSSAAVAAD 60 LESARNTTAD VAVSKFKRVI SLLDRTRTGH ARFRRAPVIS PIQEIKPTPF QAPPQIRKGS 120 FSSSIKTIDF SSLSSVTTES DHKKHLHRPS ETAPFETQSL STSSLSKSTK RKCNSENLIA 180 GKCVSASSSG RCHCSKKRKI KQKRVIRVPA ISAKMSDVPP DDYSWRKYGQ KPIKGSPHPR 240 GYYKCSSVRG CPARKHVERA ADDSSMLIVT YEGDHNHSLS AADLAGAAVA DLILESS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 3e-22 | 207 | 279 | 2 | 73 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00275 | DAP | Transfer from AT2G23320 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10000270m |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK353321 | 0.0 | AK353321.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-29-B06. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006404816.1 | 0.0 | probable WRKY transcription factor 15 | ||||
Swissprot | O22176 | 1e-171 | WRK15_ARATH; Probable WRKY transcription factor 15 | ||||
TrEMBL | E4MXS4 | 0.0 | E4MXS4_EUTHA; mRNA, clone: RTFL01-29-B06 | ||||
TrEMBL | V4LR32 | 0.0 | V4LR32_EUTSA; Uncharacterized protein | ||||
STRING | XP_006404816.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1715 | 28 | 87 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G23320.1 | 1e-143 | WRKY DNA-binding protein 15 |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10000270m |
Entrez Gene | 18021987 |
Publications ? help Back to Top | |||
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