PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Thhalv10000111m | ||||||||
Common Name | EUTSA_v10000111mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 550aa MW: 62704.2 Da PI: 7.8402 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 47 | 4.5e-15 | 6 | 94 | 1 | 96 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 ffk l + s+ l++p f+ ++ g ++++++t +l++ s +Wevk+ + + + lt+GWkeFv a++L++gD+ +F+ ++++ f + Thhalv10000111m 6 FFKPL--LPGFHSH-LTIPVAFFLKYikGTNEQKKTTAKLRSdASDITWEVKI--EDG-Q--KLTDGWKEFVLAHDLRVGDIAIFRQEKDMAF--H 91 66666..5667777.************9888889999***997888*******..333.2..4***********************7776777..6 PP EEE CS B3 94 vkv 96 v++ Thhalv10000111m 92 VTL 94 665 PP | |||||||
2 | B3 | 67.8 | 1.6e-21 | 143 | 226 | 4 | 89 |
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 + +++ +l+ + l lp +fa+++g++++++ +++l++ +grsW++ l +kk g++++++GW+ F++ang k+g+ ++Fkl++r + Thhalv10000111m 143 AHVTHASLRYDSLNLPMSFARANGLNTRCG-EIVLMNDKGRSWTLAL-KQKKCGSTYIRRGWRTFCSANGFKAGEAFTFKLIQRGK 226 556788899999**************9987.****************.47777789*************************99633 PP | |||||||
3 | B3 | 81.9 | 6.2e-26 | 293 | 382 | 4 | 95 |
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 + +++++l+++rl+lp++f +e+g++++++ +++l++e grsW+++l+ +++ g+ ++++GW++F++angL++gD+++Fkl++r +++lv++ Thhalv10000111m 293 AKVSPSTLRQDRLYLPRNFSRENGLDTRCG-EIVLMNEMGRSWTLNLKRKNSCGTAYIRRGWRSFCRANGLRAGDSITFKLIQR-GGTLVLR 382 56789999******************9987.****************98888888***************************95.5556665 PP | |||||||
4 | B3 | 53.9 | 3.2e-17 | 451 | 543 | 5 | 99 |
-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 ++++ +l++ + lp +f++ hg+++e ++++l d++g +W+ +l+ + +++r+ + +GW+eF kan +k g++v++kl+++ ++++v+k+++ Thhalv10000111m 451 TLKPFNLTKYVMLLPIPFTRMHGINEE--TKMSLVDKHGVRWSTNLRSEITGDRIRMVGGWQEFFKANCVKIGESVMLKLIWEGDKSCVLKFCS 542 5556667777899**********9954..58****************************************************9999***9998 PP S CS B3 99 k 99 k Thhalv10000111m 543 K 543 6 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 8.83E-19 | 3 | 105 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 6.2E-22 | 3 | 111 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.012 | 3 | 98 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 7.51E-14 | 4 | 94 | No hit | No description |
SMART | SM01019 | 3.0E-19 | 6 | 98 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.2E-10 | 14 | 91 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 4.8E-22 | 133 | 232 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.14E-18 | 135 | 232 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 9.9E-24 | 140 | 236 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 5.15E-18 | 140 | 232 | No hit | No description |
PROSITE profile | PS50863 | 15.326 | 140 | 235 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.9E-20 | 143 | 229 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 6.5E-24 | 286 | 383 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.53E-24 | 288 | 388 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.14E-26 | 290 | 383 | No hit | No description |
PROSITE profile | PS50863 | 18.034 | 290 | 387 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.9E-24 | 291 | 382 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.3E-34 | 291 | 387 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 4.8E-17 | 439 | 543 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 7.65E-19 | 443 | 541 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.17E-14 | 446 | 541 | No hit | No description |
Pfam | PF02362 | 2.4E-15 | 447 | 543 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.5E-18 | 447 | 544 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.746 | 447 | 543 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 550 aa Download sequence Send to blast |
MANKHFFKPL LPGFHSHLTI PVAFFLKYIK GTNEQKKTTA KLRSDASDIT WEVKIEDGQK 60 LTDGWKEFVL AHDLRVGDIA IFRQEKDMAF HVTLMGPSCC EIQYESGLDD ENNLGKIPKK 120 TKVKKNPRKE TESSSLDPSC FVAHVTHASL RYDSLNLPMS FARANGLNTR CGEIVLMNDK 180 GRSWTLALKQ KKCGSTYIRR GWRTFCSANG FKAGEAFTFK LIQRGKVPVL RLSTTESEEE 240 EESSGADEVE SLSTEPESDE ESNLAEIQRR KKLKKNPERE TESYPLDPSY FVAKVSPSTL 300 RQDRLYLPRN FSRENGLDTR CGEIVLMNEM GRSWTLNLKR KNSCGTAYIR RGWRSFCRAN 360 GLRAGDSITF KLIQRGGTLV LRLSPTDSEE EEEEEEEEEE EESSEGDEIE SLSTEQESDE 420 EGNQDEKSFK KPRLLWKASS TPSQNRFVTL TLKPFNLTKY VMLLPIPFTR MHGINEETKM 480 SLVDKHGVRW STNLRSEITG DRIRMVGGWQ EFFKANCVKI GESVMLKLIW EGDKSCVLKF 540 CSKLKQVTK* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 267 | 274 | QRRKKLKK |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Thhalv10000111m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013743891.1 | 0.0 | B3 domain-containing protein REM14 | ||||
Swissprot | O23076 | 0.0 | REM15_ARATH; Putative B3 domain-containing protein REM15 | ||||
TrEMBL | V4LRK3 | 0.0 | V4LRK3_EUTSA; Uncharacterized protein | ||||
STRING | XP_006405006.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM204 | 22 | 261 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G00260.1 | 0.0 | B3 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Thhalv10000111m |
Entrez Gene | 18022321 |
Publications ? help Back to Top | |||
---|---|---|---|
|