PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010943911.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 382aa MW: 42083.1 Da PI: 4.7685 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 54.6 | 1.4e-17 | 10 | 58 | 2 | 50 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 +ien+++r t+ kRr g+ KKA+ LS LC++ +avi f+++g+l +++ XP_010943911.1 10 FIENQRQRLATYRKRRGGLRKKASQLSSLCGVPIAVISFGPNGRLDTWP 58 8***********************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.9E-12 | 1 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 18.096 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 4.66E-18 | 2 | 85 | No hit | No description |
SuperFamily | SSF55455 | 3.79E-19 | 3 | 88 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.9E-9 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.2E-17 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.9E-9 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.9E-9 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 382 aa Download sequence Send to blast |
MARRRRRWQF IENQRQRLAT YRKRRGGLRK KASQLSSLCG VPIAVISFGP NGRLDTWPDD 60 QGAIHDLLLT YRSFDPEKRR KHDLDLPTLL EAQEGSQNLL WDPRLDAMPT ESLRNLTNSL 120 DSKVKAIDER IQQLLEENSK CSNQDNNNSS REQGVNSKCN DQDNNNTGSE QRDDSKSSNQ 180 GNNNTSSGRG DDSRGSNEGN NNTSTEQSLP PCSNPVVFDP FPINKRNAYA ELFHGLDESG 240 RFIYPPHTSI AFDLYPINYD ASMGVATSAW LPDSLSSSVP TDFSHAINSS SQAFSSVPSS 300 PLMPPPSTSN NRAFGNDHPF CPPESSFGDF FESCEFLMGG DDIVGANTFG GTLTIEEPLP 360 SAFGGTLTIE EPLPSAFGPP VQ |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 4 | 24 | RRRWQFIENQRQRLATYRKRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010943911.1 | 0.0 | transcription factor mef2A-like |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4572 | 29 | 60 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18650.1 | 4e-15 | AGAMOUS-like 103 |