PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010943625.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

GRAS

Protein Properties

Length: 439aa MW: 47506.9 Da PI: 6.0109

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010943625.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	274.1	4.4e-84	193	437	1	263
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 lv+lLl+cAeav+++d +a+++L +l+ +sp gd+mqR+a++f+ ALa+r + + + +p + + s ++l++++++++++P++kf+h XP_010943625.1 193 LVHLLLACAEAVAKDDYLAARRYLHNLNRVVSPFGDSMQRVASCFADALATRPSP-----SPSPNPYPPP---SLDTLKIYQILYQACPYIKFAH 279 68************************************************999.....4444555555...899*************** PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190 +taNqaI ea+e+e+rvH+iD+di qG QWpa+lqaLa+Rp+gpp lRiTgvg+ e++++tg+ La++A++l+vpfef+++v++rledl+ XP_010943625.1 280 FTANQAIFEAFESEDRVHVIDLDILQGYQWPAFLQALAARPGGPPALRITGVGH----PFESVRQTGRHLAELAHSLRVPFEFHPVVVDRLEDLR 370 **************************************************....99******************************* PP GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealey 263 + +L+ + gEal Vn v +lh ++ ++ + +L ++++ Pkvv++veqea hn++ Fl rfleal+y XP_010943625.1 371 PGMLHRRIGEALTVNAVCRLHLVP---GAHH---GPLLAMIRDQAPKVVTLVEQEAGHNGPYFLGRFLEALHY 437 *******************9...4433...48**********************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	50.753	167	439	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.5E-81	193	437	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 439 aa Download sequence Send to blast
MGCMGSMAAP RLHTTHPTIT KGKSQSPLHK VFNSFSCSSS PFSSSTQFIN GGCLALPSMD 60 AFLDEYGKDN YGLCPSSSNG TPGMECSSDA FELPPTSTLP SLLDCLTMES RYGGDVGETV 120 ATGLQTSGEG DLYQMNQLGF GGAAQQQGRD IDHGLAGSVG KFELVEASYN GLLGGPIIIP 180 PESEQEQDSG LQLVHLLLAC AEAVAKDDYL AARRYLHNLN RVVSPFGDSM QRVASCFADA 240 LATRPSPSPS PNPYPPPSLD TLKIYQILYQ ACPYIKFAHF TANQAIFEAF ESEDRVHVID 300 LDILQGYQWP AFLQALAARP GGPPALRITG VGHPFESVRQ TGRHLAELAH SLRVPFEFHP 360 VVVDRLEDLR PGMLHRRIGE ALTVNAVCRL HLVPGAHHGP LLAMIRDQAP KVVTLVEQEA 420 GHNGPYFLGR FLEALHYLL

Sequence ? help Back to Top

Protein Sequence Length: 439 aa Download sequence Send to blast

MGCMGSMAAP RLHTTHPTIT KGKSQSPLHK VFNSFSCSSS PFSSSTQFIN GGCLALPSMD  60
AFLDEYGKDN YGLCPSSSNG TPGMECSSDA FELPPTSTLP SLLDCLTMES RYGGDVGETV  120
ATGLQTSGEG DLYQMNQLGF GGAAQQQGRD IDHGLAGSVG KFELVEASYN GLLGGPIIIP  180
PESEQEQDSG LQLVHLLLAC AEAVAKDDYL AARRYLHNLN RVVSPFGDSM QRVASCFADA  240
LATRPSPSPS PNPYPPPSLD TLKIYQILYQ ACPYIKFAHF TANQAIFEAF ESEDRVHVID  300
LDILQGYQWP AFLQALAARP GGPPALRITG VGHPFESVRQ TGRHLAELAH SLRVPFEFHP  360
VVVDRLEDLR PGMLHRRIGE ALTVNAVCRL HLVPGAHHGP LLAMIRDQAP KVVTLVEQEA  420
GHNGPYFLGR FLEALHYLL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	2e-56	175	437	1	269	Protein SCARECROW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that functions in mycorrhizal specific signaling (PubMed:23122845). Required for Myc factor signaling from mycorrhizal fungi, but has no function in Nod factor signaling from rhizobial bacteria (PubMed:23122845). Regulates the expression of RAM2, a glycerol-3-phosphate acyl transferase that promotes cutin biosynthesis to enhance mycorrhizal hyphopodia formation (PubMed:23122845). {ECO:0000269\|PubMed:23122845}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced in roots during colonization by arbuscular mycorrhizal fungi. {ECO:0000269\|PubMed:23122845}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_029116587.1	0.0	DELLA protein GAI
Swissprot	G7L166	1e-142	RAM1_MEDTR; GRAS family protein RAM1
TrEMBL	A0A3Q0I5S5	0.0	A0A3Q0I5S5_PHODC; DELLA protein RGL1-like
STRING	XP_008791129.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9221	31	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66350.1	8e-55	RGA-like 1

Publications ? help Back to Top
Tang H, et al. An improved genome release (version Mt4.0) for the model legume Medicago truncatula. BMC Genomics, 2014. 15: p. 312 [PMID:24767513] Pecrix Y, et al. Whole-genome landscape of Medicago truncatula symbiotic genes. Nat Plants, 2018. 4(12): p. 1017-1025 [PMID:30397259]