PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010943521.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MYB_related
Protein Properties Length: 693aa    MW: 74380.5 Da    PI: 9.9021
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010943521.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.42.8e-121161347
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT......TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmg......kgRtlkqcksrwqky 47
                      W t+E++ll++av+++G+++W+++a +++        +t+ +c+ r++++
   XP_010943521.1 11 IWGTWEELLLACAVNRHGTRSWDSVAMEVQarspfsHLLTPQNCRQRYRDL 61
                     6***********************************88**********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.423462IPR017877Myb-like domain
SMARTSM007173.5E-6864IPR001005SANT/Myb domain
SuperFamilySSF466895.83E-6864IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.0E-4961IPR009057Homeodomain-like
CDDcd001673.66E-61261No hitNo description
PfamPF002491.4E-111261IPR001005SANT/Myb domain
SMARTSM002979.4E-10307417IPR001487Bromodomain
Gene3DG3DSA:1.20.920.103.0E-14309432IPR001487Bromodomain
SuperFamilySSF473702.09E-14312419IPR001487Bromodomain
CDDcd043692.07E-14318412No hitNo description
PfamPF004396.0E-9326401IPR001487Bromodomain
PROSITE profilePS500149.904326398IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 693 aa     Download sequence    Send to blast
MARSGDQERE IWGTWEELLL ACAVNRHGTR SWDSVAMEVQ ARSPFSHLLT PQNCRQRYRD  60
LQRRFAVAAG IDGGADAAGN DSAAAEVPWL EELRKLRVAE LRREVERYDL SIVSLELKVK  120
KLKEEQERSL RETVAGEREE DPKDDDTKVG GSPGSTPGSF AGDRISGGDS GGSCNESNST  180
NPKDEGKPGG EDGKPEENPG SGGGEADPTA GRGEKAAGEG SYNGSSDTIA KGEAATEADL  240
PRPQTGESGE SVAESKGGVA EAEGEKESSD VQSSASLSRR RKGWRGKAAS ASSSGGDEQE  300
ADEDSLIAKR IATESQPLVS FLEIIRCHEF GSVFERRLES QESGRYRSVI RQHVDLAMVR  360
AKLERGVGRA YTSVEFFRDL LLLCNNAIVF YPKDSSESTA AVHLRQLVAK EMAATIQKLA  420
RPPPAAVEPA PPPLPPPPQP KPIVPKLKKD LDLADSLPEK PSSSAPIIAC RKRSSISNKA  480
KKEERDEKHD LDRKEREREE QNLSAKKSHT RERSATRGLR TNKNRSGNRA GGEGGAAVGK  540
STNTTPSHKS KPVESTPVAE VAVKAEKKSG GASVEKKRSS ASFLNRIKRS SPSSNGTFLE  600
TLKGSSSEGG GRGAEQKKGG KGDRKDQGSR QEGGATYAKK TPEPSAPGKR SVGRPPKRVV  660
AQPNPTLAKR AREEAEAAPA KPPTASSRKR ARK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010943521.10.0uncharacterized protein LOC105061234 isoform X1
TrEMBLA0A2H3ZDS40.0A0A2H3ZDS4_PHODC; uncharacterized protein LOC103723225
STRINGXP_008812296.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31812648
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57980.16e-51DNA-binding bromodomain-containing protein