PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010943413.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 259aa MW: 28893.4 Da PI: 8.2934 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.9 | 8.6e-19 | 119 | 173 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tk+q Le+ F+++++++ ++++ LAk+l+L rqV vWFqNrRa+ k XP_010943413.1 119 RKKLRLTKDQSALLEDKFKEQSTLNPKQKQALAKQLNLRPRQVEVWFQNRRARTK 173 788899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 120 | 1.3e-38 | 119 | 207 | 1 | 90 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 +kk+rl+k+q++lLE++F+e+++L+p++K++la++L+l+prqv+vWFqnrRARtk+kq+E d+e+Lkr +++l++en+rL+kev+eL+ + XP_010943413.1 119 RKKLRLTKDQSALLEDKFKEQSTLNPKQKQALAKQLNLRPRQVEVWFQNRRARTKLKQTEIDCEVLKRYCETLSDENRRLQKEVHELK-A 207 69*************************************************************************************9.4 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 17.281 | 115 | 175 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.67E-17 | 115 | 176 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 1.6E-15 | 117 | 179 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 4.3E-16 | 119 | 173 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.2E-17 | 119 | 173 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 2.08E-16 | 119 | 176 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 150 | 173 | IPR017970 | Homeobox, conserved site |
SMART | SM00340 | 2.7E-21 | 175 | 218 | IPR003106 | Leucine zipper, homeobox-associated |
Pfam | PF02183 | 3.0E-10 | 175 | 208 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MDNGDTCDTG LALGLNYNAS GPCSDGHGHR EPIVKLERSS SNMVSVEPSL TLGLSDDTHG 60 SIKSTEEARV ARQSSPHSTV SSFSDGHPSN TKKENSIKSE EAQKFSFRVS DEEEEGSARK 120 KLRLTKDQSA LLEDKFKEQS TLNPKQKQAL AKQLNLRPRQ VEVWFQNRRA RTKLKQTEID 180 CEVLKRYCET LSDENRRLQK EVHELKALRF ASPVYMQFPA TALTMCPSCK KITSTGSEGS 240 KAPEPHSMFM NPFTHSAAC |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 167 | 175 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010943413.1 | 0.0 | homeobox-leucine zipper protein HAT22 | ||||
Swissprot | P46604 | 5e-72 | HAT22_ARATH; Homeobox-leucine zipper protein HAT22 | ||||
TrEMBL | A0A2H3YHI9 | 1e-150 | A0A2H3YHI9_PHODC; homeobox-leucine zipper protein HAT22-like | ||||
STRING | XP_008798887.1 | 1e-150 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2055 | 36 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37790.1 | 2e-74 | HD-ZIP family protein |
Publications ? help Back to Top | |||
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