PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010943247.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | C3H | ||||||||
Protein Properties | Length: 371aa MW: 40547.6 Da PI: 7.4007 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 39 | 1.4e-12 | 23 | 48 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C+ff++tGtCk+G++Ck++H++ XP_010943247.1 23 GQPDCQFFLKTGTCKFGATCKYHHPQ 48 6899********************97 PP | |||||||
2 | zf-CCCH | 37.4 | 4.1e-12 | 70 | 93 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 + C++++rtG Ck+G CkF+H++ XP_010943247.1 70 KSCPYYMRTGLCKFGTACKFNHPQ 93 56********************97 PP | |||||||
3 | zf-CCCH | 39.7 | 8.1e-13 | 210 | 235 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tG CkyG +Ck++H++ XP_010943247.1 210 DQPECQYYMKTGSCKYGTSCKYHHPK 235 689*********************96 PP | |||||||
4 | zf-CCCH | 29 | 1.8e-09 | 254 | 280 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C f+ +G CkyG++CkF H++ XP_010943247.1 254 PGQPVCTFYGMYGSCKYGSTCKFDHPF 280 57899********************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 15.751 | 21 | 49 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.0E-7 | 21 | 48 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.1E-10 | 23 | 48 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.45E-6 | 26 | 52 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.6E-4 | 27 | 48 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.502 | 66 | 94 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.09E-6 | 68 | 94 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.9E-5 | 68 | 93 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.8E-9 | 69 | 93 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.9E-5 | 71 | 92 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.986 | 208 | 236 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 9.7E-6 | 208 | 235 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.5E-10 | 210 | 235 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.31E-6 | 211 | 237 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.0E-5 | 214 | 236 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.49E-5 | 252 | 279 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.817 | 253 | 281 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.7E-4 | 253 | 280 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.8E-7 | 255 | 280 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 371 aa Download sequence Send to blast |
MGVIADTIIL ITFGSGELPE RDGQPDCQFF LKTGTCKFGA TCKYHHPQDK HDPHPVQLNI 60 LGLPLRKDEK SCPYYMRTGL CKFGTACKFN HPQPTSHATM LPVTGPSPYG STGYPAASPS 120 GLPLIAGLSM WPFSRPPYMS NQHIQGVPCM SLVLPPTQGA MPVQQGWSTD TGGINNVASA 180 GVVGSTQISN PKHHAQSGSS TPVNFPERPD QPECQYYMKT GSCKYGTSCK YHHPKERNQV 240 AMCTIGPLGL PLRPGQPVCT FYGMYGSCKY GSTCKFDHPF MGYYNYTLPA FSLPGVPDHT 300 VLFSDSRNSQ AMWMPSEDSP SKTMRLLDQH VKSETSEEPQ GSDDNNHGNH STQTSPSHIA 360 HHSESPEKYS D |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010943247.1 | 0.0 | zinc finger CCCH domain-containing protein 66 isoform X3 | ||||
TrEMBL | A0A2H3YTC1 | 0.0 | A0A2H3YTC1_PHODC; zinc finger CCCH domain-containing protein ZFN-like isoform X1 | ||||
STRING | XP_008803512.1 | 0.0 | (Phoenix dactylifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02830.1 | 1e-65 | zinc finger protein 1 |