PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010942787.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family GRAS
Protein Properties Length: 539aa    MW: 58306 Da    PI: 5.4857
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010942787.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS328.11.7e-1001355382374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl.fsevsPilkfsh 95 
                      +lLlecA+av+++d +++q+l++ l+elasp+gd+ q++a+yf++AL arl++ ++++  +l++ ++++ + +++   + l f+e+sP+  f+h
  XP_010942787.1 135 AQLLLECARAVAARDSQRVQQLMWMLNELASPYGDTEQKVASYFLQALFARLTSAGPRTLLTLAAASDRTCSFDST-RRTALrFQELSPWSSFGH 228
                     589********************************************************99998888775443333.333335************ PP

            GRAS  96 ltaNqaIleavege.........ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg...skeeleetgerLakfAeelgvpfe 177
                     ++aN aIle++  +         +r+Hi+D++ + ++QWp+Ll+aLa+R+ +++p+l iT+v+s++s     ++ ++e+g+r++kfA+ +gvpf+
  XP_010942787.1 229 VAANGAILESFLDAaggggspqpQRLHILDLSNTFCTQWPTLLEALATRSsDDTPHLSITTVVSSASPsaaVQRVMKEIGQRMEKFARLMGVPFK 323
                     **********98777778889999**************************8889*******9996665788999********************* PP

            GRAS 178 fnvlvak.rledleleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse............sFlerf 257
                     fnv+++  +l++l+l++L++++  g  laVn+v +lh++     +  s+rd +++++++l+P +v+vve+e+d++++             Fl+ f
  XP_010942787.1 324 FNVIHHAgDLSELDLDRLDLREggGALLAVNCVNALHSVS----PAGSRRDLFINALRRLQPLIVTVVEEESDLQAAsggdgggeegeeGFLKVF 414
                     ****7777**************99999************8....777889*********************999776789999999999****** PP

            GRAS 258 lealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve 352
                      e+l+++sa fdsle+++pr+s+er  +Er+  gr++v++vac  ae+ er+et++ W+ r+++aGF p+++se++a+++++llr++  +g+++ 
  XP_010942787.1 415 RESLRFFSAYFDSLEESFPRTSNERLALERA-AGRAVVDLVACPAAESAERRETAAGWSLRMRAAGFAPAAFSEDVADDVRALLRRYR-EGWSMR 507
                     *******************************.********************************************************.776666 PP

            GRAS 353 ee.........sgslvlgWkdrpLvsvSaWr 374
                     +             ++l Wkd+p+v++SaW+
  XP_010942787.1 508 SAgeaddpggaAPGIFLAWKDQPVVWASAWK 538
                     4444567777788999**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098551.888108510IPR005202Transcription factor GRAS
PfamPF035145.7E-98135538IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 539 aa     Download sequence    Send to blast
MDTLFRLVSL QSSDQQSSFK SSRTSSSSRS SKANHHLFHQ PFQNREEEKY REECGNNYHV  60
CVDEDFSSSS SSKHLQPHPS TAATPTPSTA ATTTTASTAH VLFELADFSF PPDLNIDFAS  120
SSSAAAGGGG GGWAAQLLLE CARAVAARDS QRVQQLMWML NELASPYGDT EQKVASYFLQ  180
ALFARLTSAG PRTLLTLAAA SDRTCSFDST RRTALRFQEL SPWSSFGHVA ANGAILESFL  240
DAAGGGGSPQ PQRLHILDLS NTFCTQWPTL LEALATRSSD DTPHLSITTV VSSASPSAAV  300
QRVMKEIGQR MEKFARLMGV PFKFNVIHHA GDLSELDLDR LDLREGGGAL LAVNCVNALH  360
SVSPAGSRRD LFINALRRLQ PLIVTVVEEE SDLQAASGGD GGGEEGEEGF LKVFRESLRF  420
FSAYFDSLEE SFPRTSNERL ALERAAGRAV VDLVACPAAE SAERRETAAG WSLRMRAAGF  480
APAAFSEDVA DDVRALLRRY REGWSMRSAG EADDPGGAAP GIFLAWKDQP VVWASAWKP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_B1e-16713353932420Protein SHORT-ROOT
5b3h_E1e-16713353932420Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for the asymmetric cell division involved in radial pattern formation in roots. Essential for both cell division and cell specification. {ECO:0000269|PubMed:17446396}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010942787.10.0protein SHORT-ROOT 1
SwissprotQ8H2X80.0SHR1_ORYSJ; Protein SHORT-ROOT 1
TrEMBLA0A2H3XQG00.0A0A2H3XQG0_PHODC; protein SHORT-ROOT 1-like
STRINGXP_008787198.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35263781
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37650.11e-131GRAS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]