PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010942613.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family HD-ZIP
Protein Properties Length: 294aa    MW: 32584.1 Da    PI: 4.4743
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010942613.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.41.2e-1862115356
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     k+++++ +q+++Le+ Fe ++++  e++ +LA++lgL+ rqV vWFqNrRa++k
  XP_010942613.1  62 KKRRLSVDQVRALEKNFELENKLEPERKVRLAQELGLQPRQVAVWFQNRRARWK 115
                     456899***********************************************9 PP
2HD-ZIP_I/II131.33.6e-4261153193
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                     ekkrrls +qv++LE++Fe e+kLeperKv+la+eLglqprqvavWFqnrRAR+ktkqlE+dy+aLk++yd+l+ + ++L++++e+L +e+k 
  XP_010942613.1  61 EKKRRLSVDQVRALEKNFELENKLEPERKVRLAQELGLQPRQVAVWFQNRRARWKTKQLERDYAALKASYDTLRVDFDALHRDKEALLAEIKM 153
                     69*************************************************************************************999985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-1941118IPR009057Homeodomain-like
SuperFamilySSF466891.15E-1949119IPR009057Homeodomain-like
PROSITE profilePS5007117.29757117IPR001356Homeobox domain
SMARTSM003895.8E-1860121IPR001356Homeobox domain
CDDcd000862.63E-1762118No hitNo description
PfamPF000466.0E-1662115IPR001356Homeobox domain
PRINTSPR000311.2E-58897IPR000047Helix-turn-helix motif
PROSITE patternPS00027092115IPR017970Homeobox, conserved site
PRINTSPR000311.2E-597113IPR000047Helix-turn-helix motif
PfamPF021832.8E-17117158IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MKRLSSSSDS LIPICPTGDE KGMYGRGFQP MMDGLDEEEC GDEELCSGSQ GGGGGGGGGG  60
EKKRRLSVDQ VRALEKNFEL ENKLEPERKV RLAQELGLQP RQVAVWFQNR RARWKTKQLE  120
RDYAALKASY DTLRVDFDAL HRDKEALLAE IKMLKEKLGD QEESPSLSSV KEEPVVSESE  180
NKASEEPPAP VYKDGSSESD SSAVLNDVLN DENSPHDRGM SMSSFGFENS PSFPCSPPSL  240
LNSDSRQPKG GFFFQHQLLK MEDGGLLGGE EPCPSFFSDD HAATLNWYYA EQWT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1109117RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated in leaves by drought stress. {ECO:0000269|PubMed:17999151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010942613.10.0homeobox-leucine zipper protein HOX20
SwissprotA2YWC06e-71HOX20_ORYSI; Homeobox-leucine zipper protein HOX20
SwissprotQ6Z2486e-71HOX20_ORYSJ; Homeobox-leucine zipper protein HOX20
TrEMBLA0A2H3YYX41e-163A0A2H3YYX4_PHODC; homeobox-leucine zipper protein HOX20-like
STRINGXP_008805896.11e-164(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30093482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G40060.15e-42homeobox protein 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]