PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010942594.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family NAC
Protein Properties Length: 299aa    MW: 34304.6 Da    PI: 6.7666
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010942594.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM163.76.9e-51261523128
             NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.. 95 
                     pGfrFhPtdeelv +yL++kve+k+l++ e+ik++diyk++PwdLpk++ ++ekewyfF+ r +ky+++ r+nr+t sg+Wkatg d++v+s+  
  XP_010942594.1  26 PGFRFHPTDEELVGFYLRRKVEKKPLTI-EIIKQIDIYKYDPWDLPKSTVGGEKEWYFFCLRGRKYRNSIRPNRVTGSGFWKATGIDRPVYSAgd 119
                     9***************************.89***************8777899***************************************866 PP

             NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      g  +glkk+Lv+y+g+a kg+ktdW+mhe+rl
  XP_010942594.1 120 AGDCIGLKKSLVYYRGSAGKGTKTDWMMHEFRL 152
                     6677***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-5523179IPR003441NAC domain
PROSITE profilePS5100554.18324179IPR003441NAC domain
PfamPF023653.4E-2526152IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005992Biological Processtrehalose biosynthetic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006561Biological Processproline biosynthetic process
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0010120Biological Processcamalexin biosynthetic process
GO:0042538Biological Processhyperosmotic salinity response
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MEEKMDKKCA GVEQEVVLEE EDVPLPGFRF HPTDEELVGF YLRRKVEKKP LTIEIIKQID  60
IYKYDPWDLP KSTVGGEKEW YFFCLRGRKY RNSIRPNRVT GSGFWKATGI DRPVYSAGDA  120
GDCIGLKKSL VYYRGSAGKG TKTDWMMHEF RLPASAKNND ISPSIQEAEI WTICRIFKRN  180
ISSRKYPQDL KSSTSKQMPT DSSSKTSSFE SDTGDEYKCF GSSNIPQGEM KSITSYYEEK  240
NQSLASQWNS VPQAPLTTLY PNIPNTSTNE FFRDNNWDEL GRIMEFMVDP SAGHECRYA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-51111855171NO APICAL MERISTEM PROTEIN
1ut4_B3e-51111855171NO APICAL MERISTEM PROTEIN
1ut7_A3e-51111855171NO APICAL MERISTEM PROTEIN
1ut7_B3e-51111855171NO APICAL MERISTEM PROTEIN
3swm_A3e-51111858174NAC domain-containing protein 19
3swm_B3e-51111858174NAC domain-containing protein 19
3swm_C3e-51111858174NAC domain-containing protein 19
3swm_D3e-51111858174NAC domain-containing protein 19
3swp_A3e-51111858174NAC domain-containing protein 19
3swp_B3e-51111858174NAC domain-containing protein 19
3swp_C3e-51111858174NAC domain-containing protein 19
3swp_D3e-51111858174NAC domain-containing protein 19
4dul_A3e-51111855171NAC domain-containing protein 19
4dul_B3e-51111855171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00310DAPTransfer from AT2G43000Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010942594.10.0transcription factor JUNGBRUNNEN 1-like
SwissprotQ9SK559e-92NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLA0A2H3Z0S90.0A0A2H3Z0S9_PHODC; transcription factor JUNGBRUNNEN 1-like isoform X1
STRINGXP_008806688.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP119138129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.11e-88NAC domain containing protein 42
Publications ? help Back to Top
  1. Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
    JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
    Plant Signal Behav, 2016. 11(6): p. e1181245
    [PMID:27159137]
  2. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  3. Shahnejat-Bushehri S, et al.
    Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
    Front Plant Sci, 2017. 8: p. 214
    [PMID:28326087]
  4. Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
    Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
    Plant J., 2017. 92(6): p. 1106-1120
    [PMID:29032592]
  5. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]