PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010942456.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | HRT-like | ||||||||
Protein Properties | Length: 524aa MW: 58288.6 Da PI: 10.0276 | ||||||||
Description | HRT-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HRT-like | 48.6 | 1.4e-15 | 272 | 302 | 1 | 31 |
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCGv+++ G vC+++PvkgR RCeeHKG+Ri XP_010942456.1 272 ICGVAIGGGLVCRNKPVKGRERCEEHKGRRI 302 8*****************************7 PP | |||||||
2 | HRT-like | 44.4 | 2.9e-14 | 322 | 352 | 1 | 31 |
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 +CG+ e GsvC++ +++gRKRCe HKG+R+ XP_010942456.1 322 VCGFFSEGGSVCSELAIHGRKRCELHKGRRV 352 7*****************************7 PP | |||||||
3 | HRT-like | 54.3 | 2.2e-17 | 387 | 417 | 1 | 31 |
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCGv dGs+C+++Pv gRKRCe HKG+Ri XP_010942456.1 387 ICGVVYWDGSICRKKPVSGRKRCEHHKGQRI 417 8*****************************7 PP | |||||||
4 | HRT-like | 52.9 | 6.3e-17 | 442 | 472 | 1 | 31 |
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCGv ++dG vC+r+Pv gRKRCeeHKG+R+ XP_010942456.1 442 ICGVVIGDGYVCRRKPVIGRKRCEEHKGRRV 472 8*****************************7 PP | |||||||
5 | HRT-like | 58 | 1.6e-18 | 494 | 523 | 2 | 31 |
HRT-like 2 CGviledGsvCkrqPvkgRKRCeeHKGmRi 31 CGv+l++Gs+C+++Pv+gRKRC HKG+R+ XP_010942456.1 494 CGVTLSNGSICMNSPVPGRKRCSLHKGRRV 523 *****************************7 PP |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:2000033 | Biological Process | regulation of seed dormancy process | ||||
GO:0097100 | Molecular Function | supercoiled DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 524 aa Download sequence Send to blast |
MSPRLKREEC LRTKHDSLFS KWKVLIGPSD WEDYSLGKDG VERYRIHNIP IHSACPGLYE 60 LGIASNPGGE DKRTRRHAAE NVIVVYLGQA DNVRTRLQQY GRAGAHLDQR NSSTSADKIE 120 FPFTQNGPGL FKEIFSRGHS IMFRWVPMTS KKEAEKKEAS LLEVFDYAWN RRGNGVCRRE 180 EVLSKLDNAA RPLSKLDNAA TSPISSAYRK VQQWKQTVFD KKAGIKINGS MPLDEVGSSE 240 GRKGFLPDVL KFVTSRPRLV QGGDGIPGDH DICGVAIGGG LVCRNKPVKG RERCEEHKGR 300 RIAGIGKVTS GEVTATSEKS SVCGFFSEGG SVCSELAIHG RKRCELHKGR RVLESHLHIS 360 SDSKLQSHMM LTKNITSAYD VDQEYNICGV VYWDGSICRK KPVSGRKRCE HHKGQRIAGT 420 RLLTSEDWMT KKECNLDEPY DICGVVIGDG YVCRRKPVIG RKRCEEHKGR RVTSPGLMIS 480 MESSRAVSRS SSACGVTLSN GSICMNSPVP GRKRCSLHKG RRVT |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019701325.1 | 0.0 | protein EFFECTOR OF TRANSCRIPTION 2 | ||||
TrEMBL | A0A2I0AH21 | 1e-157 | A0A2I0AH21_9ASPA; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7948 | 34 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56780.1 | 1e-82 | effector of transcription2 |