PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010942001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | GATA | ||||||||
Protein Properties | Length: 291aa MW: 33061 Da PI: 9.5221 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 59.6 | 4e-19 | 167 | 200 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 Cs C ttkTplWR+gp+g+k+LCnaCG+++rk + XP_010942001.1 167 CSDCSTTKTPLWRSGPQGPKSLCNACGIRQRKAR 200 *******************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57716 | 2.99E-13 | 161 | 204 | No hit | No description |
SMART | SM00401 | 5.8E-20 | 161 | 212 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 6.9E-16 | 165 | 200 | IPR013088 | Zinc finger, NHR/GATA-type |
PROSITE profile | PS50114 | 12.532 | 165 | 197 | IPR000679 | Zinc finger, GATA-type |
CDD | cd00202 | 3.08E-11 | 166 | 194 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 167 | 192 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 7.6E-17 | 167 | 200 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 291 aa Download sequence Send to blast |
MSPSNLNQSS LPLKKRNQDQ IHHLPNSTAT TNTSYPRPVL LETSIEDQGA NCREHHGHHY 60 HQQQQQEKPN EFVLIDGSSD FPQPTNTDDN NDKMDQYVCN GYHEDEDGHG SVKWMPSKMR 120 WMRKMVASEQ TVRSKPARRS MEDLQEEKQH NQDMSNSNFP SGTIRVCSDC STTKTPLWRS 180 GPQGPKSLCN ACGIRQRKAR RAMAAAATGS GLRATNTPRK VQKEKRRGRD HTIPNKKRCK 240 IDTTRTAQRK LEIDDIMMSL SNNSAFHRVF PQDETDAAIL LMALSCGLIH R |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010942001.1 | 0.0 | putative GATA transcription factor 22 | ||||
TrEMBL | A0A2H3YF04 | 1e-155 | A0A2H3YF04_PHODC; putative GATA transcription factor 22 | ||||
STRING | XP_008797761.1 | 8e-93 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1893 | 38 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G26150.1 | 7e-30 | cytokinin-responsive gata factor 1 |