PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010941970.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family HD-ZIP
Protein Properties Length: 270aa    MW: 29895.7 Da    PI: 8.6992
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010941970.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox597.6e-19123177256
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     rk+ ++tkeq   Le+ F+++++++ +e++ LA++l+L+ rqV vWFqNrRa+ k
  XP_010941970.1 123 RKKLRLTKEQSALLEDKFKEQSTLNPKEKQNLANQLNLQPRQVEVWFQNRRARTK 177
                     788899***********************************************98 PP
2HD-ZIP_I/II117.38.4e-38123212191
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                     +kk+rl+keq++lLE++F+e+++L+p++K++la++L+lqprqv+vWFqnrRARtk+kq+E+d e+Lkr++++l++en+rL+ke +eLr +l
  XP_010941970.1 123 RKKLRLTKEQSALLEDKFKEQSTLNPKEKQNLANQLNLQPRQVEVWFQNRRARTKLKQTEVDRETLKRCCESLSDENRRLQKELNELR-AL 212
                     69*************************************************************************************9.44 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.28E-18114180IPR009057Homeodomain-like
PROSITE profilePS5007117.637119179IPR001356Homeobox domain
SMARTSM003893.0E-16121183IPR001356Homeobox domain
PfamPF000463.7E-16123177IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.0E-17123177IPR009057Homeodomain-like
CDDcd000864.43E-17123180No hitNo description
PROSITE patternPS000270154177IPR017970Homeobox, conserved site
SMARTSM003401.4E-20179222IPR003106Leucine zipper, homeobox-associated
PfamPF021831.2E-8179213IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MSMGQEDTCG TNLVLGLSYD SHSGHGHGET IVKLERSSAN MISLEPSLTL GLSSDTHGST  60
MAKVDGSKAW MEEGSRLARQ SSPQSTVSMF SHTKTKRENS MKSDETERVS SRVSDEEEEG  120
NARKKLRLTK EQSALLEDKF KEQSTLNPKE KQNLANQLNL QPRQVEVWFQ NRRARTKLKQ  180
TEVDRETLKR CCESLSDENR RLQKELNELR ALKIASPLCM QFPAAAAAAA LTMCPSCKRI  240
TTGSEGSKGG GFVVAPRAHF FNPFTHSAAC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1171179RRARTKLKQ
2185190ETLKRC
3186190TLKRC
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010941970.10.0homeobox-leucine zipper protein HAT22
RefseqXP_029116301.10.0homeobox-leucine zipper protein HAT22
SwissprotP466042e-74HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBLA0A2H3YCZ81e-157A0A2H3YCZ8_PHODC; homeobox-leucine zipper protein HAT22-like
STRINGXP_008796968.11e-158(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20553698
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.11e-68HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
    The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence.
    Elife, 2017.
    [PMID:27697148]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]