PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010941887.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family G2-like
Protein Properties Length: 411aa    MW: 45306.4 Da    PI: 7.7965
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010941887.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.61e-31194247255
         G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     pr+rWt++LH++Fv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  XP_010941887.1 194 PRMRWTTTLHAHFVHAVELLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRT 247
                     9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.79E-15191248IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.1E-28192248IPR009057Homeodomain-like
TIGRFAMsTIGR015574.9E-23194247IPR006447Myb domain, plants
PfamPF002493.0E-7195246IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0080060Biological Processintegument development
GO:0005618Cellular Componentcell wall
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MSSFPSHHLS LSFTVSLHYF LFFSLLSQPF LFAIPPSPNL RSLGYLLALT LPWPPPFVCC  60
YPELKSMITG TTSPASAFMA FPDLSLQISP PALSIKGSMR RAFFGNHNSM SDSGSSGSDM  120
SLDRGLLHPE GFQDPDHGEP TLSLGFKTSA SDLLHHQLYH NLHHHHHHHH HPQIYGFKRN  180
SRSVHGGKRS IRAPRMRWTT TLHAHFVHAV ELLGGHERAT PKSVLELMNV KDLTLAHVKS  240
HLQMYRTVKS TDRGAGQGQT DMGMNQRTGG TGEVEGGLSC DRAGISPSYS LSAPTPPTPL  300
PKSPIRGPYP SAKEDTGNAE THQNELSHCY LKCDNFLNRE NQAVVAVGEA LHLSPKEGQE  360
GTNTRISLLP SLQTDADMLQ KLPNLEITLG RQSWQIECVE SSNELTLLKC L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-16195249458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-16195249458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-16195249458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-16195249458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-16195249458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-16195249458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-16195249458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-16195249458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00107PBMTransfer from AT5G42630Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010941887.10.0probable transcription factor KAN4
TrEMBLA0A2H3ZFU41e-173A0A2H3ZFU4_PHODC; probable transcription factor KAN4
STRINGXP_008813185.11e-173(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP65543750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42630.11e-52G2-like family protein