PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010941839.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

LBD

Protein Properties

Length: 316aa MW: 34085.4 Da PI: 6.5678

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010941839.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	137.6	4.5e-43	7	106	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk++rrkCa++Cv+apyfp +qp+kfan+h++FGasnv kll++lp+++reda++sl+yeAear++dPvyG+vg i+ lq++l+q++++l XP_010941839.1 7 PCAACKLQRRKCAQGCVFAPYFPPDQPQKFANMHRVFGASNVAKLLNELPPSQREDAVNSLAYEAEARLQDPVYGCVGYISILQHRLKQVQHDLY 101 7*********************************************************************************************9 PP DUF260 96 llkee 100 ++k+e XP_010941839.1 102 AAKKE 106 99887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	27.059	6	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	7.0E-43	7	104	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 316 aa Download sequence Send to blast
MSSSNSPCAA CKLQRRKCAQ GCVFAPYFPP DQPQKFANMH RVFGASNVAK LLNELPPSQR 60 EDAVNSLAYE AEARLQDPVY GCVGYISILQ HRLKQVQHDL YAAKKELSAY IGPAALGPFL 120 PQPGPHHPAA LVGGSHHHPQ YQFQGASSSN AQPFGMPGMG MGMGMGMGMG MGMELGLAAG 180 AGPSVPTQHA QILMHEQQLM EAQQMAAAAA AVREQEMLRS YEQQQQELAR FGAGYTDGRG 240 FDLMGGGATV AVHPGEPSGL ALVPPQPIET PFLFQQPQQY AQQPWQQQQE QEEQARYFQH 300 HRTGSDEGSS GMGPSS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-50	4	110	8	114	LOB family transfactor Ramosa2.1
5ly0_B	2e-50	4	110	8	114	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010941839.1	0.0	LOB domain-containing protein 36-like
TrEMBL	A0A3Q0I737	1e-119	A0A3Q0I737_PHODC; LOB domain-containing protein 6-like
STRING	XP_008792635.1	1e-120	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6143	34	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66870.1	2e-65	ASYMMETRIC LEAVES 2-like 1