PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010941812.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 174aa MW: 18965.1 Da PI: 9.1085 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 53.4 | 3.3e-17 | 4 | 48 | 3 | 47 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47 ie k ++ f+kRr+gi+KKA EL vLC+a++ vi +s+ gk + XP_010941812.1 4 IEKKEALHICFTKRRQGIFKKAGELAVLCGAQITVITLSPGGKPF 48 88899999********************************99855 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 18.376 | 1 | 54 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 4.0E-15 | 1 | 53 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.57E-19 | 2 | 73 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.7E-20 | 3 | 50 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 174 aa Download sequence Send to blast |
MGKIEKKEAL HICFTKRRQG IFKKAGELAV LCGAQITVIT LSPGGKPFSF GQPSTDAVIA 60 RYLDPGRHQV PIPITTSLEI RLRYYLKYCK LGEQSGGGLW WWEAPIDGLD LEELVVMKGA 120 IEELYKAILK KANQPTSAGE AVQGMPQKPS LAMLNGSYHL PVSSVPGSDP AFPI |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010941812.1 | 1e-126 | agamous-like MADS-box protein AGL61 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1224 | 36 | 128 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 8e-26 | AGAMOUS-like 61 |