PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010941240.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | C3H | ||||||||
Protein Properties | Length: 348aa MW: 37980.9 Da PI: 7.1973 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 24.8 | 3.8e-08 | 95 | 120 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+lC+ f++ GtC+y +C+FaHg+ XP_010941240.1 95 FKTKLCCKFRA-GTCPYITNCNFAHGM 120 69*********.*************95 PP | |||||||
2 | zf-CCCH | 18.3 | 4.3e-06 | 164 | 189 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 yk + C+ f+ C+yGd+C+F H+ XP_010941240.1 164 YKGRHCKKFYTEEGCPYGDTCTFLHD 189 78888********************7 PP | |||||||
3 | zf-CCCH | 43.7 | 4.4e-14 | 225 | 250 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C+ + tG+C++G++C+FaHg XP_010941240.1 225 WKTRICNKWEMTGYCPFGSKCHFAHG 250 8************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 2.0E-14 | 92 | 127 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.63E-8 | 92 | 125 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0016 | 94 | 120 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.737 | 94 | 121 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.2E-5 | 95 | 120 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.75E-7 | 162 | 191 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.4E-8 | 163 | 191 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.742 | 163 | 191 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.15 | 163 | 190 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.9E-17 | 220 | 254 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.54E-10 | 221 | 255 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.657 | 224 | 252 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.6E-9 | 224 | 251 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.7E-11 | 225 | 250 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 348 aa Download sequence Send to blast |
MDYSSNAIEI IPEATGPEPW AQASSEQAIW ATEDDYRSWS GEPSADTVSN PAYGDRQSQS 60 QSRAGSEQPP SKKPRNSLEG NGSTSKSRAI GKMFFKTKLC CKFRAGTCPY ITNCNFAHGM 120 EELRKPPPNW QEIVAAQEGM EPREEHQIPI LTSSNLGGDG QRSYKGRHCK KFYTEEGCPY 180 GDTCTFLHDE QSKARESVAI SLSPTVGGSG YGGGSNGSSQ KPSNWKTRIC NKWEMTGYCP 240 FGSKCHFAHG TAELHRYGGG LVEMEGRDTP SVATDSKQAG ASTRAPTETV VASMTSVPHA 300 DVYHMGGPSQ RSTVVSQRQG LGQGQRLQKW KGPDKISRIY GDWIDESE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010941240.2 | 0.0 | zinc finger CCCH domain-containing protein 56 | ||||
Swissprot | Q84UQ3 | 1e-148 | C3H56_ORYSJ; Zinc finger CCCH domain-containing protein 56 | ||||
TrEMBL | A0A2H3YIP1 | 0.0 | A0A2H3YIP1_PHODC; zinc finger CCCH domain-containing protein 56-like | ||||
STRING | XP_008799391.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6615 | 38 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32360.1 | 1e-111 | C3H family protein |