PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010941176.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MYB_related
Protein Properties Length: 799aa    MW: 88053.5 Da    PI: 7.0751
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010941176.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.54.9e-1671115147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r rWT+eE+ ++++a k++G   W +I +++g ++t+ q++s+ qk+
   XP_010941176.1  71 RERWTEEEHNRFLEALKLYGRA-WQRIEEHIG-TKTAVQIRSHAQKF 115
                      78******************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.97E-1765121IPR009057Homeodomain-like
PROSITE profilePS5129420.17366120IPR017930Myb domain
TIGRFAMsTIGR015577.4E-1769118IPR006447Myb domain, plants
SMARTSM007171.1E-1270118IPR001005SANT/Myb domain
PfamPF002493.3E-1371114IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-871111IPR009057Homeodomain-like
CDDcd001671.58E-973116No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 799 aa     Download sequence    Send to blast
MRYYFRQIER VVGDMEGGSL LFVDDLNSKX DLWLFSCACS AEIWSLEMEA NSLRKDLVVK  60
TRKPYTITKQ RERWTEEEHN RFLEALKLYG RAWQRIEEHI GTKTAVQIRS HAQKFFTKLE  120
KEAVLKGSPP GQAHDIDIPP PRPKRKPSTP YPRKSWVGSV SPTGDAMNDK SSKSVSLVST  180
NKQVWDMGSD TPQKKFAATL TLQKRVVSED GSCSEVLNFF QDASSASISS VNNSSSNPHM  240
EFVPKMKEIK ETTRDKSSVS VEVNKDININ VTAYMAQEIQ RPERFHIDSQ ANLDHEKGAD  300
TSKQQDSLGS LLRDNMQSNY SNSKHVPVHL LDKNSEEVEQ TTDSDVHNFT AVPGQVGGVH  360
ENSKSFINPM VSATPKLHNS SAMPCIHQPF PALPPFAISH GNQDAYRSFL NISSPFSSLI  420
MSTLLQNPAV HAAASLAASF WPSADVDSST NSTPETQSGG FPLRHMNHSP SLASITAATV  480
AAASAWWATQ GLSPLFPPPH IGFTFNPPAA TTIPTVATAQ APEYETEGKE GAFQNLVAED  540
QVGNPAQSMD LNTRHASPKS SSSSEAGDSD NSGSGERSHC TELKASRTNK FKPLTATGFN  600
DHDKTKSNKK TDRSSCGSNT PSSSEVETNT ILDKHEKFDD EAKQAYFSNP LAAQTNNRRS  660
RSNGTINESW KEVSEEGRLA FQALFSREVL PQSFSPPHAE DTMAKENEAV TLPVDLNKAC  720
ETTDLNHLHG FTKEMSNRSN DNTGKGSLTS EIGQGKLKSR RTGFKPYKRC SMEAKENRTA  780
AVEETANKRV RLEGEASTR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00654PBMTransfer from LOC_Os08g06110Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010941176.20.0protein LHY-like isoform X1
TrEMBLA0A2H3ZCB50.0A0A2H3ZCB5_PHODC; protein LHY-like isoform X1
STRINGXP_008811397.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60313447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46830.19e-42circadian clock associated 1