PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010941170.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MIKC_MADS
Protein Properties Length: 209aa    MW: 23906.3 Da    PI: 7.989
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010941170.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF95.52.3e-301059251
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    rien + rqvtfskRrng+lKKA+ELSvLCdaeva+i+fs++gklye+ss
  XP_010941170.1 10 RIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGKLYEFSS 59
                    8***********************************************96 PP
2K-box78.71.4e-2679171698
           K-box   6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                      ++++++++++l+ e a L k+ie+L+  +R+llGe+Les++++eL++Le qLeksl++iR++K+++l  qi++l++kek+l ++n +L+++l
  XP_010941170.1  79 VNKQTKEHNAQLKSETASLMKKIEQLEACKRKLLGENLESCTVEELHELEFQLEKSLSNIRERKYHMLAGQIDRLKEKEKNLLKRNSSLHEML 171
                     45578889999******************************************************************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.6E-40160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.917161IPR002100Transcription factor, MADS-box
CDDcd002652.93E-41371No hitNo description
PRINTSPR004048.9E-31323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.36E-32375IPR002100Transcription factor, MADS-box
PfamPF003193.3E-271057IPR002100Transcription factor, MADS-box
PRINTSPR004048.9E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004048.9E-313859IPR002100Transcription factor, MADS-box
PfamPF014863.1E-2584171IPR002487Transcription factor, K-box
PROSITE profilePS5129714.4987177IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MVRGKTEVRR IENATSRQVT FSKRRNGLLK KAFELSVLCD AEVALIVFSP RGKLYEFSSS  60
SSMEKTLDRY LLHAMDANVN KQTKEHNAQL KSETASLMKK IEQLEACKRK LLGENLESCT  120
VEELHELEFQ LEKSLSNIRE RKYHMLAGQI DRLKEKEKNL LKRNSSLHEM LNPETQLQLF  180
APGNAVSDDH DGQNTEVETE LVIGRPGMC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A9e-18170169MEF2C
5f28_B9e-18170169MEF2C
5f28_C9e-18170169MEF2C
5f28_D9e-18170169MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010941170.11e-152MADS-box protein SOC1 isoform X1
SwissprotA2Z9Q75e-69MAD56_ORYSI; MADS-box transcription factor 56
TrEMBLQ400I31e-103Q400I3_ELAGV; AGL20-like MADS box transcription factor
STRINGXP_008788732.13e-92(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP14133379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45660.12e-65AGAMOUS-like 20