PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010941057.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

Trihelix

Protein Properties

Length: 309aa MW: 36215.5 Da PI: 7.5642

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010941057.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	77.1	2.8e-24	54	141	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkryk...kikegekkrtsessstcpyfdqle 86 +W+++e+++Li +r ++e++l ++ +k+lWe+v+++mre+g++r++ qCk+kw+nl +ryk ++++e +e+ ++cp+f++l+ XP_010941057.1 54 QWSESETRELIGIRGDLERDLTVARWNKTLWEAVAARMREKGYRRTSDQCKCKWKNLVNRYKfgfVTQDTETA-DPENGRQCPFFEELH 141 7***********************************************************54334555554.699999*****98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	8.235	47	111	IPR017877	Myb-like domain
Pfam	PF13837	8.1E-20	53	142	No hit	No description
CDD	cd12203	7.71E-20	54	115	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 309 aa Download sequence Send to blast
MMLGGRGGGG GGDGDALSGR IAMIAGLPPQ PNRSWQQQQQ QMRMGKEEKV AQAQWSESET 60 RELIGIRGDL ERDLTVARWN KTLWEAVAAR MREKGYRRTS DQCKCKWKNL VNRYKFGFVT 120 QDTETADPEN GRQCPFFEEL HAVFTERARN MQRLLLESES SASHSKKKLK RLGVDRSSGE 180 FSEDDDEDDE DSDDEHLSKG RKKKADKGAH QQQRTKASGG IHELLQEFLQ QQQRVEVQWR 240 ELMERRALER RAFEQEWRQS MEKLERERVM LEQAWREREE QRRMREESRA DKRDALLTTL 300 LNKLIQDDF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	3	11	GGRGGGGGG

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010941057.1	0.0	trihelix transcription factor GT-3b isoform X1
TrEMBL	A0A2H3YU93	1e-137	A0A2H3YU93_PHODC; trihelix transcription factor GT-3b-like
STRING	XP_008803970.1	1e-138	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP10688	30	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38250.1	4e-24	Trihelix family protein