PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010939826.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

NAC

Protein Properties

Length: 362aa MW: 40370.7 Da PI: 7.2887

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010939826.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	183.3	5.9e-57	17	143	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdeel+++yL+kkv + ++++ +i evd++k+ePwdLp ++k +e+ewyfF+ rd+ky+tg r+nrat++gyWkatgkdke+++ XP_010939826.1 17 LPPGFRFHPTDEELITHYLCKKVMDASFNA-GAIGEVDLNKCEPWDLPCRAKMGEEEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIYR- 109 79************************99.89***********9889999***********************************. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrle 129 +++lvg+kktLvfy+grapkgek++Wvmheyrle XP_010939826.1 110 GKSLVGMKKTLVFYRGRAPKGEKSNWVMHEYRLE 143 999***************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.05E-64	13	167	IPR003441	NAC domain
PROSITE profile	PS51005	59.801	17	167	IPR003441	NAC domain
Pfam	PF02365	1.3E-29	18	142	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 362 aa Download sequence Send to blast
MEHGGVVLHK GEEHMDLPPG FRFHPTDEEL ITHYLCKKVM DASFNAGAIG EVDLNKCEPW 60 DLPCRAKMGE EEWYFFCVRD RKYPTGLRTN RATEAGYWKA TGKDKEIYRG KSLVGMKKTL 120 VFYRGRAPKG EKSNWVMHEY RLEGKYSVYN LPKTAKNEWV ICRVFQKNSS GKKVMGLGRV 180 GSSFGDELAT SLLPPLMDIP FTSKNKDSLV SDPAHVTCFS NAVEGPKGHE ELPAGYINSP 240 FISASANLSE VPPPSLLLSR MSLPSSLYAR QGAPDWGSML HSGGSLVQLL ESNGYGLKQS 300 WKTDREKPSV SQETGLTTDM NPEISSALSN NEMRRQSFDG QEVPYTSAGP LHLDESLWSY 360 SI

Sequence ? help Back to Top

Protein Sequence Length: 362 aa Download sequence Send to blast

MEHGGVVLHK GEEHMDLPPG FRFHPTDEEL ITHYLCKKVM DASFNAGAIG EVDLNKCEPW  60
DLPCRAKMGE EEWYFFCVRD RKYPTGLRTN RATEAGYWKA TGKDKEIYRG KSLVGMKKTL  120
VFYRGRAPKG EKSNWVMHEY RLEGKYSVYN LPKTAKNEWV ICRVFQKNSS GKKVMGLGRV  180
GSSFGDELAT SLLPPLMDIP FTSKNKDSLV SDPAHVTCFS NAVEGPKGHE ELPAGYINSP  240
FISASANLSE VPPPSLLLSR MSLPSSLYAR QGAPDWGSML HSGGSLVQLL ESNGYGLKQS  300
WKTDREKPSV SQETGLTTDM NPEISSALSN NEMRRQSFDG QEVPYTSAGP LHLDESLWSY  360
SI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-55	3	173	3	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-55	3	173	3	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-55	3	173	3	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-55	3	173	3	171	NO APICAL MERISTEM PROTEIN
4dul_A	1e-55	3	173	3	171	NAC domain-containing protein 19
4dul_B	1e-55	3	173	3	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010939825.1	0.0	NAC domain-containing protein 100
Refseq	XP_010939826.1	0.0	NAC domain-containing protein 100
Swissprot	Q9FLJ2	1e-128	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A2H3YR36	0.0	A0A2H3YR36_PHODC; NAC domain-containing protein 100-like
STRING	XP_008802569.1	0.0	(Phoenix dactylifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	1e-127	NAC domain containing protein 100

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]