PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010939701.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family HD-ZIP
Protein Properties Length: 293aa    MW: 32902.4 Da    PI: 4.6893
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010939701.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.21.4e-1857110356
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     k+++++ +q+++Le+ Fe ++++  +++ +LA+ lgL+ rqV +WFqNrRa++k
  XP_010939701.1  57 KKRRLSVDQVRALEKNFEVENKLEPDRKVRLAHDLGLQPRQVAIWFQNRRARWK 110
                     456899***********************************************9 PP
2HD-ZIP_I/II1292e-4156148193
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                     ekkrrls +qv++LE++Fe e+kLep+rKv+la++Lglqprqva+WFqnrRAR+ktkqlE+dy+aLk +y+al+ + ++L +++e+L +e+k 
  XP_010939701.1  56 EKKRRLSVDQVRALEKNFEVENKLEPDRKVRLAHDLGLQPRQVAIWFQNRRARWKTKQLERDYAALKGSYEALRVDFDALYRDKEALLNEIKM 148
                     69*************************************************************************************999975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.3E-1937113IPR009057Homeodomain-like
SuperFamilySSF466892.44E-1943114IPR009057Homeodomain-like
PROSITE profilePS5007116.77952112IPR001356Homeobox domain
SMARTSM003899.2E-1855116IPR001356Homeobox domain
CDDcd000865.05E-1657113No hitNo description
PfamPF000467.7E-1657110IPR001356Homeobox domain
PRINTSPR000314.6E-58392IPR000047Helix-turn-helix motif
PROSITE patternPS00027087110IPR017970Homeobox, conserved site
PRINTSPR000314.6E-592108IPR000047Helix-turn-helix motif
PfamPF021834.5E-15112153IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0030308Biological Processnegative regulation of cell growth
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048573Biological Processphotoperiodism, flowering
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MKRVSSSDYL IPFCPTDEGK GMYERGFQPM IDGLGEEECG DEEMCSSGSG GGGGGEKKRR  60
LSVDQVRALE KNFEVENKLE PDRKVRLAHD LGLQPRQVAI WFQNRRARWK TKQLERDYAA  120
LKGSYEALRV DFDALYRDKE ALLNEIKMLK EKLAEEESAS FSSVKQESVA LESQNKVSEE  180
PPAPVYKDGS SDSDSSAVLN DENSPHGRRM SSSTAFETFS AAIGFENSTS FPCSPPSLLN  240
SDARQQKGGI FFQHQLLKTE DHGFLSSEEP CSSFLSDDQA AILNWYYYSE HWT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1104112RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. May be involved in the regulation of gibberellin signaling. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:18049796}.
UniProtProbable transcription activator that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. May be involved in the regulation of gibberellin signaling. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:18049796}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00051PBMTransfer from AT4G40060Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By gibberellin. Down-regulated in leaves by drought stress. {ECO:0000269|PubMed:17999151, ECO:0000269|PubMed:18049796}.
UniProtINDUCTION: By gibberellin. Down-regulated in leaves by drought stress. {ECO:0000269|PubMed:17999151, ECO:0000269|PubMed:18049796}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010939701.10.0homeobox-leucine zipper protein HOX20
SwissprotQ6K4981e-66HOX4_ORYSJ; Homeobox-leucine zipper protein HOX4
SwissprotQ9XH371e-66HOX4_ORYSI; Homeobox-leucine zipper protein HOX4
TrEMBLA0A3Q0I1M11e-164A0A3Q0I1M1_PHODC; homeobox-leucine zipper protein HOX20-like isoform X2
STRINGXP_008790926.11e-163(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30093482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G40060.16e-63homeobox protein 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]