PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010939527.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | AP2 | ||||||||
Protein Properties | Length: 391aa MW: 42419.5 Da PI: 4.868 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 36.3 | 1.4e-11 | 209 | 265 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++ k++g+++A+++d s+ g krk + g+++++e+Aa+a++ a++k++g XP_010939527.1 209 SSYHGVTRLKWSGKFEAHLWDnRSQvEGrKRKGKH-GSYDSEEKAARAHDLAALKYWG 265 679******************66668777778888.********************98 PP | |||||||
2 | AP2 | 52.7 | 1.1e-16 | 310 | 363 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng.kr..krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++k +g+W A+I + g r k ++lg+f+t+eeAa+a++ a+ +l+g XP_010939527.1 310 SIYRGVTRRK-DGKWQARIGRV---GdSRdaKDIYLGTFDTEEEAAEAYDIAAIELRG 363 57*****999.9*******997...443347*************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.5E-12 | 209 | 276 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.4E-8 | 209 | 265 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.37E-13 | 209 | 277 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 5.3E-11 | 210 | 276 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 16.713 | 210 | 275 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.5E-16 | 210 | 281 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.22E-18 | 310 | 373 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 8.1E-11 | 310 | 363 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.98E-23 | 310 | 373 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.8E-19 | 311 | 371 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.335 | 311 | 371 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 9.2E-29 | 311 | 377 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.5E-5 | 312 | 323 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.5E-5 | 337 | 353 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 391 aa Download sequence Send to blast |
MVKGKSLDLA QMSEEKRSPD PSEDPEPSKN PASLLPSLDD SGERSESNAA GEKVAAESSE 60 ASGHQEDAAH KVDSVANAAA EEKSDPLEAT VAEKAESLEE AATGEERVRS DVPSRNSEDH 120 DEKKADSSDA ADGSGLVVAL YVPIFDKSSS RSGEELNATS TDAEKAEIVE VTNGGSSVDA 180 MAGPGKNPEK KVGTLLAAAM KKYAAPRSSS YHGVTRLKWS GKFEAHLWDN RSQVEGRKRK 240 GKHGSYDSEE KAARAHDLAA LKYWGPNPNT KLNFPVSDYE KELETMQTMC QEEYVAYVRR 300 KSSCFSRGAS IYRGVTRRKD GKWQARIGRV GDSRDAKDIY LGTFDTEEEA AEAYDIAAIE 360 LRGVHAVTNF DISNYCEGGL KRLEGPCKLE T |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010939526.1 | 0.0 | AP2-like ethylene-responsive transcription factor PLT2 | ||||
TrEMBL | A0A2H3Z361 | 0.0 | A0A2H3Z361_PHODC; AP2-like ethylene-responsive transcription factor BBM1 | ||||
STRING | XP_008807712.1 | 0.0 | (Phoenix dactylifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57390.1 | 7e-61 | AINTEGUMENTA-like 5 |