PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010939500.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MYB
Protein Properties Length: 300aa    MW: 33367.6 Da    PI: 8.117
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010939500.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.11.7e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++lv +++++G+g+W++++   g+ R+ k+c++rw +yl
   XP_010939500.1 14 KGPWTPEEDLILVSYIQEHGPGNWRAVPTNTGLMRCNKSCRLRWTNYL 61
                     79********************************************97 PP
2Myb_DNA-binding543.8e-1767112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T+eE++l++++ ++lG++ W++Ia++++  Rt++++k++w++++
   XP_010939500.1  67 RGNFTEEEEKLIIHLQALLGNR-WAAIASYLP-ERTDNDIKNYWNTHM 112
                      89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.2E-25564IPR009057Homeodomain-like
PROSITE profilePS5129417.668961IPR017930Myb domain
SuperFamilySSF466894.49E-3111108IPR009057Homeodomain-like
SMARTSM007174.8E-131363IPR001005SANT/Myb domain
PfamPF002495.2E-161461IPR001005SANT/Myb domain
CDDcd001671.20E-101661No hitNo description
PROSITE profilePS5129426.07362116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.7E-2565117IPR009057Homeodomain-like
SMARTSM007175.6E-1766114IPR001005SANT/Myb domain
PfamPF002495.0E-1667111IPR001005SANT/Myb domain
CDDcd001673.29E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0080167Biological Processresponse to karrikin
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MGRPPCCDKV GVKKGPWTPE EDLILVSYIQ EHGPGNWRAV PTNTGLMRCN KSCRLRWTNY  60
LRPGIKRGNF TEEEEKLIIH LQALLGNRWA AIASYLPERT DNDIKNYWNT HMKKKIKKLQ  120
AGDGSSMSGG LPSDQSVSKG RWERRLQTDI HMAKQALREA LSLDKPNCQT ELKSFTKPCQ  180
PATSSSTTKY ASSTENISRW LQGWMKNPPK PGAAPSNSEY EQHSINNMVG TDSSSSEASA  240
SAANNDGSAS PIVFESLLNV DSSTPEMSET SLFQGESKPI SEAQVQLSLL ETWLMDYLVQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-27141164105MYB PROTO-ONCOGENE PROTEIN
1h8a_C2e-271411627128MYB TRANSFORMING PROTEIN
1mse_C2e-27141164105C-Myb DNA-Binding Domain
1msf_C2e-27141164105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00395DAPTransfer from AT3G47600Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010939500.10.0myb-related protein 306
SwissprotP813921e-111MYB06_ANTMA; Myb-related protein 306
TrEMBLA0A2H3XIA41e-142A0A2H3XIA4_PHODC; myb-related protein 306
STRINGXP_008784211.11e-142(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22938296
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47600.11e-98myb domain protein 94
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]