PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010939328.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family HD-ZIP
Protein Properties Length: 278aa    MW: 30951.1 Da    PI: 9.1129
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010939328.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.71e-18130184256
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     rk+ ++tkeq   Lee F+++++++ ++++ LAk+l+L  rqV vWFqNrRa+ k
  XP_010939328.1 130 RKKLRLTKEQSALLEERFKEHSTLNPKQKQALAKQLHLRPRQVEVWFQNRRARTK 184
                     788899***********************************************98 PP
2HD-ZIP_I/II123.31.1e-39130219191
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                     +kk+rl+keq++lLEe F+e+++L+p++K++la++L+l+prqv+vWFqnrRARtk+kq+E+d+e Lkr++++l++en+rL+ke +eL+ +l
  XP_010939328.1 130 RKKLRLTKEQSALLEERFKEHSTLNPKQKQALAKQLHLRPRQVEVWFQNRRARTKLKQTEVDCEILKRCCETLTDENRRLKKELQELK-AL 219
                     69*************************************************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.7E-17121187IPR009057Homeodomain-like
PROSITE profilePS5007117.346126186IPR001356Homeobox domain
SuperFamilySSF466899.84E-18127187IPR009057Homeodomain-like
SMARTSM003891.9E-15128190IPR001356Homeobox domain
CDDcd000862.08E-16130187No hitNo description
PfamPF000464.1E-16130184IPR001356Homeobox domain
PROSITE patternPS000270161184IPR017970Homeobox, conserved site
PfamPF021832.3E-11186220IPR003106Leucine zipper, homeobox-associated
SMARTSM003402.8E-23186229IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009735Biological Processresponse to cytokinin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MEMSQDDMCD TGLALGLGIR GRSSSSSDLH HRHEPWSTFP SITKPCKPSL TLGLSSGVYG  60
ATAVTKAESH KTYNEEFTPA RLSSPHSTLS SFSTAYPPSI KREKDAGSDV GEVERVFSRA  120
SDEEEDASAR KKLRLTKEQS ALLEERFKEH STLNPKQKQA LAKQLHLRPR QVEVWFQNRR  180
ARTKLKQTEV DCEILKRCCE TLTDENRRLK KELQELKALK FASPLYMRFP AAALTMCPSC  240
ERVSGASNGS SKGSGPEPFM VAQPKPHLLN PFTHSAAC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1178186RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00477DAPTransfer from AT4G37790Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010939328.10.0homeobox-leucine zipper protein HAT9
SwissprotP466041e-76HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBLA0A2H3XXM31e-119A0A2H3XXM3_PHODC; homeobox-leucine zipper protein HAT9-like
STRINGXP_008785763.11e-144(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20553698
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.11e-63HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
    The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence.
    Elife, 2017.
    [PMID:27697148]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]