PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010938978.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family GRAS
Protein Properties Length: 549aa    MW: 59630.4 Da    PI: 5.2578
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010938978.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3351.4e-1021455482374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl.fsevsPilkfsh 95 
                      +lLlecA+av+++d +++q+l++ l+elasp+gd+ q++a+yf++AL arl++ ++++ ++l++ ++++ + +++     l f+e+sP+  f+h
  XP_010938978.1 145 AQLLLECARAVAARDSQRVQQLMWMLNELASPYGDTEQKVASYFLQALFARLTSAGPRTLRTLAAASDRTCSFDSTRRTA-LrFQELSPWSSFGH 238
                     589************************************************************99888855533333333.35************ PP

            GRAS  96 ltaNqaIleavege.........ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg...skeeleetgerLakfAeelgvpfe 177
                     ++aN aIle++  +         +r+Hi+D++ + ++QWp+Ll+aLa+R+ +++p+l iT+v+s++s     ++ ++e+ +r++kfA+ +gvpf+
  XP_010938978.1 239 VAANGAILESFLDAaaagggsqpQRLHILDLSNTFCTQWPTLLEALATRSsDDTPHLSITTVVSSASPsaaVQRVMKEIVQRMEKFARLMGVPFK 333
                     *********997766777788899**************************8889*******99966657889999******************** PP

            GRAS 178 fnvlvak.rledleleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse............sFlerf 257
                     fnv+++  +l++l+le L+++   + alaVn+v +lh +     +   +rd+++  +++l+P++v+vve+ead++++             Fl++f
  XP_010938978.1 334 FNVIHHAgDLSELDLECLDLRDggDAALAVNCVNALHGVS----PAGRRRDAFIASLRRLQPRIVTVVEEEADLEAAccgdgggeegeeGFLKGF 424
                     ****7777**************98889************8....666678***********************9988999999999999****** PP

            GRAS 258 lealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrv 351
                      e+l+++sa fdsle+++pr+s+er  +Er+  gr+ v++vac  ae+ er+et++ W++r++eaGF p+++se++a+++k+llr++  ++ +rv
  XP_010938978.1 425 RESLRFFSAYFDSLEESFPRTSNERLALERA-AGRAMVDLVACPAAESAERRETASGWSRRMREAGFAPAAFSEDVADDVKALLRRYReGWSMRV 518
                     *******************************.********************************************************8888999 PP

            GRAS 352 eee.......sgslvlgWkdrpLvsvSaWr 374
                      ee        + ++l Wkd+p+v++SaW+
  XP_010938978.1 519 AEEaedpgsaAAGIFLAWKDQPVVWASAWK 548
                     977778887778889**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098552.288118520IPR005202Transcription factor GRAS
PfamPF035144.9E-100145548IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008356Biological Processasymmetric cell division
GO:0009956Biological Processradial pattern formation
GO:0045930Biological Processnegative regulation of mitotic cell cycle
GO:0048366Biological Processleaf development
GO:0055072Biological Processiron ion homeostasis
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 549 aa     Download sequence    Send to blast
MDTLFRLVSL QSSDQQSSFN SSRTSSGSRT SKAHHFLHHP FQNQEEELYR EECGNNYHLY  60
MDEDFSSSSS SKHFHPHPST TTTTTTPPVP STAAATPTIS STAHVLFEPA DFSFPPDLNI  120
DFASPSSSSS AAGAAVPGGG GGWAAQLLLE CARAVAARDS QRVQQLMWML NELASPYGDT  180
EQKVASYFLQ ALFARLTSAG PRTLRTLAAA SDRTCSFDST RRTALRFQEL SPWSSFGHVA  240
ANGAILESFL DAAAAGGGSQ PQRLHILDLS NTFCTQWPTL LEALATRSSD DTPHLSITTV  300
VSSASPSAAV QRVMKEIVQR MEKFARLMGV PFKFNVIHHA GDLSELDLEC LDLRDGGDAA  360
LAVNCVNALH GVSPAGRRRD AFIASLRRLQ PRIVTVVEEE ADLEAACCGD GGGEEGEEGF  420
LKGFRESLRF FSAYFDSLEE SFPRTSNERL ALERAAGRAM VDLVACPAAE SAERRETASG  480
WSRRMREAGF APAAFSEDVA DDVKALLRRY REGWSMRVAE EAEDPGSAAA GIFLAWKDQP  540
VVWASAWKP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B1e-17210854965474Protein SHORT-ROOT
5b3h_B1e-17210854911420Protein SHORT-ROOT
5b3h_E1e-17210854911420Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for the asymmetric cell division involved in radial pattern formation in roots. Essential for both cell division and cell specification. {ECO:0000269|PubMed:17446396}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010938978.10.0protein SHORT-ROOT 1-like
SwissprotQ8H2X80.0SHR1_ORYSJ; Protein SHORT-ROOT 1
TrEMBLA0A2H3XQG00.0A0A2H3XQG0_PHODC; protein SHORT-ROOT 1-like
STRINGXP_008787198.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35263781
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37650.11e-133GRAS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]