PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010938327.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | C3H | ||||||||
Protein Properties | Length: 286aa MW: 30972.5 Da PI: 6.231 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 41 | 3.1e-13 | 217 | 241 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ktelC+ + + G+C+yG+rC+FaHg XP_010938327.1 217 KTELCNKWVEKGWCPYGERCQFAHG 241 8***********************8 PP | |||||||
2 | zf-CCCH | 22 | 2.9e-07 | 254 | 278 | 1 | 25 |
--S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaH 25 ykt lCr a +G C+yG rC+F H XP_010938327.1 254 YKTQLCRMLASGGDCPYGHRCHFRH 278 9**********************88 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 6.3E-17 | 213 | 248 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.3E-10 | 214 | 247 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 9.1E-6 | 215 | 242 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.032 | 215 | 243 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.7E-10 | 217 | 241 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.53E-8 | 249 | 282 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.2E-12 | 249 | 278 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0042 | 253 | 280 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.901 | 253 | 281 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.8E-5 | 254 | 278 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 286 aa Download sequence Send to blast |
MEGEITLPAS QNSVAGTHTS CCSFEDGDES TGESAGWISG DRFEIQKHQI LRELQQMVNR 60 YNDCFRQLQA ALSDLDVLRH DNLQLNADHL HLTFLLEEME ASAAAAATAA GRESVPPEAQ 120 GKQKIVGGET ATEDPDPDPA PPGGSDGGGG KGGTRGGLPK SISIRSRGFL AVKQPPAGGD 180 VEARRPHRLR LPASAALKGE EGDGEVEVEA YSQGMAKTEL CNKWVEKGWC PYGERCQFAH 240 GIQELRPVIR HPRYKTQLCR MLASGGDCPY GHRCHFRHAL PSHRDA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1rgo_A | 8e-22 | 217 | 278 | 5 | 66 | Butyrate response factor 2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010938326.1 | 0.0 | putative zinc finger CCCH domain-containing protein 21 | ||||
TrEMBL | A0A3Q0I5L6 | 1e-157 | A0A3Q0I5L6_PHODC; putative zinc finger CCCH domain-containing protein 21 | ||||
STRING | XP_008795538.1 | 1e-158 | (Phoenix dactylifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68200.1 | 1e-41 | C3H family protein |