PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010938225.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family WRKY
Protein Properties Length: 315aa    MW: 34269.7 Da    PI: 5.8418
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010938225.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY106.41.5e-33154211259
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     +Dgy+WrKYGqK vk+s+fprsYYrCtsa C vkk+vers+ dp vv++tYeg+H+h+
  XP_010938225.1 154 EDGYRWRKYGQKAVKNSPFPRSYYRCTSAMCGVKKRVERSSVDPAVVITTYEGQHTHP 211
                     8********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.7E-34139212IPR003657WRKY domain
SuperFamilySSF1182907.72E-28145211IPR003657WRKY domain
PROSITE profilePS5081130.767148213IPR003657WRKY domain
SMARTSM007742.4E-40153212IPR003657WRKY domain
PfamPF031061.1E-26154211IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MIMEKRAEKM EVAAVAGVSQ FVADQIGGIF DIAFDSGGDK TSEGFLELLG LQDLPVSIFD  60
LPAPAAPVEE ATPSEPPPES SAVLNFPATP NSSSISSSST EAATDTDPVK TQPEEHEQHE  120
TKKIDSKGGK NKRQKRQSEP RFAFMTKSEV DHLEDGYRWR KYGQKAVKNS PFPRSYYRCT  180
SAMCGVKKRV ERSSVDPAVV ITTYEGQHTH PSTVLPRGVH PALLPPPLAA EMPPLPPPAE  240
GLGSVLPSLQ ATELHFPYFT SYLPSPPMDF RHVSAGIITA PSGDLRDCKP TADILNRDHG  300
LLQDVIRSDI GNKKE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-28143210774Probable WRKY transcription factor 4
2lex_A6e-28143210774Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010938223.10.0probable WRKY transcription factor 48
RefseqXP_010938224.10.0probable WRKY transcription factor 48
RefseqXP_029124025.10.0probable WRKY transcription factor 48
SwissprotQ9FGZ42e-44WRK48_ARATH; Probable WRKY transcription factor 48
TrEMBLA0A2H3X1C01e-157A0A2H3X1C0_PHODC; probable WRKY transcription factor 48
STRINGXP_008776831.11e-158(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47260.14e-46WRKY DNA-binding protein 23
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]