PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010938139.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | WOX | ||||||||
Protein Properties | Length: 241aa MW: 26505.7 Da PI: 10.1657 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 48.4 | 1.6e-15 | 28 | 88 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+++eq+ +Le+ F++ +p ++e ++ k l + +++V++WFqNrR + ++ XP_010938139.1 28 RSRWTPKPEQILILESIFNSgMVNPPKDETVRIRKLLekfgAVGDANVFYWFQNRRSRSRR 88 89*****************99*************************************997 PP | |||||||
2 | Wus_type_Homeobox | 107.9 | 6.2e-35 | 27 | 90 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 r+RWtP+peQi iLe++++sG+++P+k+e+ ri++ Le++G+++d+NVfyWFQNr++R+r++q XP_010938139.1 27 MRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGAVGDANVFYWFQNRRSRSRRRQ 90 589***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 11.37 | 24 | 89 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 4.28E-14 | 25 | 95 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 3.8E-7 | 26 | 93 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 7.0E-9 | 26 | 93 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 3.1E-13 | 28 | 88 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MDDQTPANNN NSPVAGSTAN RTAAEPMRSR WTPKPEQILI LESIFNSGMV NPPKDETVRI 60 RKLLEKFGAV GDANVFYWFQ NRRSRSRRRQ RQLQAALAAD PRAAGGGHHA GGAIMCAPTS 120 SSSSTSSSNS SSGGFFPCSS SSSSSFMQED GADDLFSISR QMGFADNYTQ TPFMYSSDAS 180 QLHYQPGFKA YLVWVQNWMN KTMVVLNNSI NNIRRCSFNR QESKLAGLRA AIPFLLLQAA 240 L |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010938138.1 | 1e-136 | WUSCHEL-related homeobox 11 | ||||
Swissprot | Q8GY25 | 1e-35 | WOX12_ARATH; WUSCHEL-related homeobox 12 | ||||
TrEMBL | A0A2H3XBN8 | 6e-70 | A0A2H3XBN8_PHODC; WUSCHEL-related homeobox 6-like | ||||
STRING | XP_008781307.1 | 1e-70 | (Phoenix dactylifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03660.1 | 2e-37 | WUSCHEL related homeobox 11 |
Publications ? help Back to Top | |||
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