PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010938117.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

NAC

Protein Properties

Length: 339aa MW: 39076.9 Da PI: 7.7273

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010938117.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	171.4	2.7e-53	7	134	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdeel+ +yL++++++ ++++ ++i+evdiyk++Pw+Lp+k+ +++ewyfFs+rd+ky++g r+nr+++sgyWkatg+dk++ + XP_010938117.1 7 LPPGFRFHPTDEELILHYLRNQAASLPCPV-SIIAEVDIYKFDPWELPAKAMFGDREWYFFSPRDRKYPNGMRPNRSAASGYWKATGTDKPIRLS 100 79**************************.89***********888889**********************************987 PP NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++e++g+kk Lvfykgr pkg+kt+W+mheyrl XP_010938117.1 101 kGNENIGVKKALVFYKGRPPKGVKTNWIMHEYRL 134 57788*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.45E-65	5	166	IPR003441	NAC domain
PROSITE profile	PS51005	61.925	7	166	IPR003441	NAC domain
Pfam	PF02365	5.1E-27	8	134	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 339 aa Download sequence Send to blast
MSDPTLLPPG FRFHPTDEEL ILHYLRNQAA SLPCPVSIIA EVDIYKFDPW ELPAKAMFGD 60 REWYFFSPRD RKYPNGMRPN RSAASGYWKA TGTDKPIRLS KGNENIGVKK ALVFYKGRPP 120 KGVKTNWIMH EYRLAEPENS NRYKPMRIRD SSMRLDDWVL CRIYKKSNHL PPVPPLIDRE 180 QEDSGTEDKY YSNLTNITQQ NPLRLPKSSS LSELLEDYSS IAHLFDNQPE MPGSSDHGSI 240 MGQPSSNQLF VNNSGNNNLV QQLHQAEPSA PNSENSLKRQ RMWDIHSEEN NGLLNHLKKR 300 NDSFIYPDFS NQFDTPNCNL LNQPFFSQQM LLNSHLGLH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-72	7	168	17	167	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-72	7	168	17	167	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-72	7	168	17	167	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-72	7	168	17	167	NO APICAL MERISTEM PROTEIN
3swm_A	2e-72	7	168	20	170	NAC domain-containing protein 19
3swm_B	2e-72	7	168	20	170	NAC domain-containing protein 19
3swm_C	2e-72	7	168	20	170	NAC domain-containing protein 19
3swm_D	2e-72	7	168	20	170	NAC domain-containing protein 19
3swp_A	2e-72	7	168	20	170	NAC domain-containing protein 19
3swp_B	2e-72	7	168	20	170	NAC domain-containing protein 19
3swp_C	2e-72	7	168	20	170	NAC domain-containing protein 19
3swp_D	2e-72	7	168	20	170	NAC domain-containing protein 19
4dul_A	1e-72	7	168	17	167	NAC domain-containing protein 19
4dul_B	1e-72	7	168	17	167	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the promoter of ACO5, an ACC oxidase involved in ethylene biosynthesis. Mediates waterlogging-induced hyponastic leaf movement, and cell expansion in abaxial cells of the basal petiole region, by directly regulating the expression of ACO5 (PubMed:24363315). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269\|PubMed:18849494, ECO:0000269\|PubMed:24363315}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By root flooding (PubMed:24363315). Induced by senescence (PubMed:24659488). {ECO:0000269\|PubMed:24363315, ECO:0000269\|PubMed:24659488}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010938117.1	0.0	NAC domain-containing protein 2
Swissprot	Q84TD6	2e-95	NAC47_ARATH; NAC transcription factor 47
TrEMBL	A0A2H3Y580	0.0	A0A2H3Y580_PHODC; NAC transcription factor 29-like
STRING	XP_008793367.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1237	36	123

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04070.1	5e-92	NAC domain containing protein 47

Publications ? help Back to Top
Hofmann NR A NAC transcription factor for flooding: SHYG helps plants keep their leaves in the air. Plant Cell, 2013. 25(12): p. 4771 [PMID:24363314] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]