PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010937966.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family WRKY
Protein Properties Length: 596aa    MW: 65356.6 Da    PI: 6.9652
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010937966.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.93.6e-32254311260
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                     dDgynWrKYGqK+vkgse+prsYY+Ct+++C++kkkver+  +++++ei+Y+g+Hnh+k
  XP_010937966.1 254 DDGYNWRKYGQKQVKGSENPRSYYKCTYPNCSTKKKVERNL-EGQITEIVYKGTHNHPK 311
                     8****************************************.***************85 PP
2WRKY106.81.1e-33421479159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK+vkg+++prsYY+Ct+ gCpv+k+ver+++dp++v++tYeg+Hnh+
  XP_010937966.1 421 LDDGYRWRKYGQKVVKGNPNPRSYYKCTTVGCPVRKHVERASHDPRAVITTYEGKHNHD 479
                     59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.0E-28241312IPR003657WRKY domain
SuperFamilySSF1182906.41E-25248312IPR003657WRKY domain
SMARTSM007746.5E-34253311IPR003657WRKY domain
PROSITE profilePS5081122.997254312IPR003657WRKY domain
PfamPF031061.1E-24254310IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.2E-37406481IPR003657WRKY domain
SuperFamilySSF1182909.55E-30413481IPR003657WRKY domain
PROSITE profilePS5081138.882416481IPR003657WRKY domain
SMARTSM007741.0E-39421480IPR003657WRKY domain
PfamPF031064.2E-26422479IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 596 aa     Download sequence    Send to blast
MASSTGSLET SANSRSTSLS FSSPFPTSFS ELLAGVGDDN MDDQPRKRDS QGLSDLAGLD  60
GGGIPKFKSI PPPSLPISPL PFSPSPYFAI PAGLSPAELL DSPVLFSSSN ILASPTTGAF  120
PSQAVNWRST SANPQQGIKE ENRAYSEFSF QPHTKPMNSQ LASFQASSAS VSMEEAFKGL  180
QQWSYLEIGN NSSEQSSQRA NIKAEHMAPI RTNSSEIPTL QANSQNNNNG GYNQLDYNHS  240
NQAAQTLRQQ GRSDDGYNWR KYGQKQVKGS ENPRSYYKCT YPNCSTKKKV ERNLEGQITE  300
IVYKGTHNHP KPPHNRRNSA SSQAIQGSLH SEASDHSFGG RSGTPIDSVA TPDNSSVSFG  360
DDDVDMSSQK SNPGGVDFDE DEPDAKRWKK EGENEGISAS GNRTVREPRV VVQTTSDIDI  420
LDDGYRWRKY GQKVVKGNPN PRSYYKCTTV GCPVRKHVER ASHDPRAVIT TYEGKHNHDV  480
PAARGSGGHT ISRPLIDNNN NNIISMAIRP SGIANHANQV TANSFFGGRL HASESQVPFP  540
LEMLQSPTSF VYSGYENSMT SFMNQPQNQQ QRHMESMLPK TKEEPREDSF LESLLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-35241482578Probable WRKY transcription factor 4
2lex_A4e-35241482578Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (By similarity). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000250|UniProtKB:Q6QHD1}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:25110688). Slightly down-regulated by gibberellic acid (GA) (By similarity). Accumulates in response to jasmonic acid (MeJA) (PubMed:16919842). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000269|PubMed:16919842, ECO:0000269|PubMed:25110688}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010937966.10.0WRKY transcription factor WRKY24
SwissprotQ6B6R41e-149WRK24_ORYSI; WRKY transcription factor WRKY24
TrEMBLA0A2H3Z9440.0A0A2H3Z944_PHODC; WRKY transcription factor WRKY24-like
STRINGXP_008809977.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29923687
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.11e-110WRKY DNA-binding protein 33
Publications ? help Back to Top
  1. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]