PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010937855.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family C3H
Protein Properties Length: 680aa    MW: 72254 Da    PI: 7.6406
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010937855.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.22.1e-06261281526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                     +C+ f++   C+ Gd C +aHg
  XP_010937855.1 261 PCPEFRK-SSCRNGDACEYAHG 281
                     8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484031.06E-1175156IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029716.57378153IPR020683Ankyrin repeat-containing domain
SMARTSM002481678108IPR002110Ankyrin repeat
Gene3DG3DSA:1.25.40.209.4E-1378160IPR020683Ankyrin repeat-containing domain
PfamPF127961.2E-878145IPR020683Ankyrin repeat-containing domain
CDDcd002043.09E-780160No hitNo description
SMARTSM002481.0E-4113145IPR002110Ankyrin repeat
PROSITE profilePS5008813.143113148IPR002110Ankyrin repeat
SMARTSM003567.3E-4256282IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.446256283IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.4E-4261282IPR000571Zinc finger, CCCH-type
SMARTSM0035621291314IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.972291315IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 680 aa     Download sequence    Send to blast
MCSGPRKPSP PPSLSTDAAD MNAGGDPKKY PEAAVLLELS ASDDLPAFKH AVEDDGLPLD  60
FSALWYCRSP GRRTMGFEQR TPLMIAALYG SPTVLSYILA ARPTEASRRS PSDGATPLHC  120
AASGGSSSSL EVVKMLMDAS ADVDLLDAAG NRPGDVIARH FCSSSTRSLE SVLKPSSPRV  180
SSPGGAKEAE KTGEKKEYPP DLTLPDIKNG IYSTDEFRMY TFKIKPCSRA YSHDWTECPF  240
VHPGENARRR DPRKYPYSCV PCPEFRKSSC RNGDACEYAH GVFESWLHPA QYRTRLCKDE  300
TGCNRRVCFF AHKPEELRTV NPSAASVAGM VLSSPRSSPP GLSSLDMATA LMLMQQPGSP  360
MSSSTSSGLG GATVWTSQPG GLMTPPSLQL PSSRLKASLN ARDLSFDLDL LGLEEYQQKL  420
IDEISSTASP RATWTPNSLG AATAASRPLD YNELFGSLDP SLLSQLQGLS LKQAAAASAS  480
AGAQFQSPSG VQRHQSQLLS GYGGNLPSSQ TVSATSSYGL DHSMAKAIMN SRASAFAKRS  540
QSFIDRGATA SRQSTLSSMS TAAAAPVVSS GLSDWGSPDG KLDWGIQGEE LNKLRKSASL  600
NFRNNQGGSG FGGAAPATAV PGGLDEPDLS WVQSLVKDGP AAPIGRRGLE QQRKGYKLNG  660
GGGDFHGSEL FSPWEEKIMA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010937855.10.0zinc finger CCCH domain-containing protein 33
SwissprotQ688R30.0C3H33_ORYSJ; Zinc finger CCCH domain-containing protein 33
TrEMBLA0A2H3XUV30.0A0A2H3XUV3_PHODC; zinc finger CCCH domain-containing protein 33-like
STRINGXP_008789109.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60132133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58620.11e-143C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]