PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010937605.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MYB_related
Protein Properties Length: 709aa    MW: 76958.9 Da    PI: 9.0506
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010937605.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.75.4e-08609658147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r ++T  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
   XP_010937605.1 609 RRPFTVAEVEALVQAVEKLGTGRWRDVKIRAFenaKHRTYVDLKDKWKTL 658
                      679***********************99998899*************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542361.48E-7411501IPR029071Ubiquitin-related domain
PROSITE profilePS500539.178417487IPR000626Ubiquitin domain
PROSITE profilePS5129415.195604663IPR017930Myb domain
SMARTSM007171.3E-7608661IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-10609659IPR009057Homeodomain-like
SuperFamilySSF466891.3E-15610691IPR009057Homeodomain-like
CDDcd116603.69E-17610660No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 709 aa     Download sequence    Send to blast
MVLQKGLDYG SSGYQVPAMP HVPRSARGKR SVRKKVDNNQ MCAFDLLATV AGKLLSERES  60
SLTSCNITGT SNPTTEKDAI KQEQLDNEKP FKNEAFDQGG CDDSTLGSEI IFHRLGSYTS  120
KEHSQMPNAG ALSPASAFVK SDNRDGFAGE SVSRGELGHS LHTSTTAQKC GTRRCSPGSV  180
ESGVCEGDGI KTPLQAEQRI TGKVIARSAP DMYSLEDPMD LDAKPPALVS SDSSAEVPPC  240
RDHVPYNSSV PKCRDGMKFS VDRDDDENSS GCTNAGTITT NAGTITTNAC KAPCIGNRRI  300
KKLLGSKYWK VGPTMSKDGQ LSNTDAEMKP VFRSRRMSCT RQRTQRSSFK RRKLFERFSI  360
SASDGGIFRE GISNPPGMGG IKVEACHSAV TLHGANGALS STTGQKSSSY ESGDYHVKLS  420
IKSFKVPELF IEIPENATVG SLKRTVLEAV TAILGRGLRV GVLLQGRKVR DDSKTLRQAG  480
ISHGEKLDNL GFTLEPNATQ APAPLASPED PHLLHPSDAI EPLSRIPPAN PTPDQGASDT  540
TPQPVLTFVA NCPESDHDSV HSPADVSSLD KTTGNSRALV PVPPMNVEAL AVVPLRKSRH  600
SEMVQRRIRR PFTVAEVEAL VQAVEKLGTG RWRDVKIRAF ENAKHRTYVD LKDKWKTLVH  660
TARISPQQRR GEPVPQELLD RVLSAHAYWS QQQARLQVKP PPAETCLLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A3e-545967004108Telomere binding protein TBP1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010937605.10.0telomere repeat-binding protein 2 isoform X2
TrEMBLA0A2H3XJI60.0A0A2H3XJI6_PHODC; telomere repeat-binding protein 2
STRINGXP_008784600.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP5245714
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-114TRF-like 2